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  1. Ansatte

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Nadav Bar

Last ned pressefoto
Last ned pressefoto
Foto:

Nadav Bar

Professor
Institutt for kjemisk prosessteknologi
Fakultet for naturvitenskap

nadi.bar@ntnu.no
73594124 46664743 Kjemi 4, 227, Gløshaugen, Sem Sælands vei 6
Microbial Feedback Control (MFC) laboratory
Om Publikasjoner Undervisning Formidling

Om

Our mission is to control the microworld. 

Combining biotechnology and control theory, we explore feedback control of microorganisms, particularly of bacteria. Our vision is to gain control over microbiological processes and to harness the power of microorganisms for research and industrial purposes.     

Awards:

  1. NEW!  Coordinator of iCulture, a Horizon Europe project (7.8 mill EUR),  2023-2028
  2. NEW! Coordinator of AILEEN, an A.I. supervised microbial feedback control (1.5 mill EUR, 2023-2028).    
  3. Coordinator of iFermenter, a bio-based EU H2020 BBI-JU project, 5.6 mill Euro, 2018-2022.
  4. Coordinator of SafeFood, an EU project of 6 countries and 8 groups (about 2.5 mill euro, 2016-2019).
    1. The main aim of the project is to turn food products (ready-to-eat products based on meat, fish, and vegetables) safer and more durable, by reducing or inhibiting the ability of Listeria monocytogenes to recover from high-pressure processing (HPP). This can extend the shelf-life of food, increasing its resistance to food-related bacteria (by rendering the food “non-hospitable” for this type of bacteria) and decrease the amount of food waste from processing and throughout the food chain. Cutting-edge biotechnological methods were applied in this project.
  5. NEW! BacPress (2023-2025) Innovation project (Norwegian Research Council) - explores and upscales the synergy between antimicrobials and High-pressure processing. 
  6. Leader in ERA SysMed-COPD project, 5.1 mill NOK (2018-2022), Here we use machine learning to improve diagnosis and prognosis for COPD.
  7. Head of the BioSystems feedback control real-time fermentation laboratory (MFCL). 

RESEARCH AREA:

  • Feedback control of bacteria (e.g. L. monocytogenes, C. glutamicum)
  • Transcription and translation regulation - modeling, analysis and control
  • Sensory motor control in animals (neuroscience)
  • Bioinformatics tools: Gene network discovery  (advanced analysis tools)
  • cellular regulation and signaling (modelling)

Current PhD students:

  • Fabienne Roessler
  • Yiwen Li 
  • Chinmay Patwardhan 
  • Lipe Carmel
  • Giacomo Sartori
  • Vitor Neves

Former and Graduated students: (PhD level)

  • Naresh D. Jayavelu, PhD 
  • Jørgen Skancke, PhD
  • Haakon Holck
  • Pedro Lira, PhD
  • Bahareh Nikvarpar, PhD
  • Andrea Tuveri, PhD

 

 Graduated Students (M.Sc level)

  • 16 students

Kompetanseord

  • Circular bioeconomy
  • Control engineering
  • Machine learning
  • Microbial bioprocesses
  • Modelling and simulations
  • programming

Publikasjoner

  • Kronologisk
  • Etter kategori
  • Se alle publikasjoner i Cristin

2024

  • Waldschitz, Daniel; Neudert, Mark-Richard; Kitzmueller, Jakob; Lachmann, Johanna; Fonteyne, Arthur; Maes, Karolien. (2024) Robust, fully quantifiable and scalable bioprocess utilizing spent sulfite liquor with Corynebacterium glutamicum. Bioresource Technology
    Vitenskapelig artikkel

2023

  • Tuveri, Andrea; Martins Nakama, Caroline Satye; Assumpcao Matias, Jose Otavio; Holck, Haakon Eng; Jäschke, Johannes; Imsland, Lars Struen. (2023) A regularized Moving Horizon Estimator for combined state and parameter estimation in a bioprocess experimental application. Computers and Chemical Engineering
    Vitenskapelig artikkel

2022

  • Tuveri, Andrea; Eng Holck, Haakon; Nakama, Caroline Satye; Matias, José O.A.; Jäschke, Johannes; Imsland, Lars Struen. (2022) Bioprocess Monitoring: A Moving Horizon Estimation Experimental Application. IFAC-PapersOnLine
    Short communication
  • Ovchinnikov, Kirill; Oftedal, Thomas Førland; Reich, Sebastian J.; Bar, Nadav; Holo, Helge; Skaugen, Morten. (2022) Genome-assisted Identification, Purification, and Characterization of Bacteriocins. Bio-protocol
    Vitenskapelig artikkel
  • Bar, Nadav; Nikparvar, Bahareh; Doni Jayavelu, Naresh; Roessler, Fabienne Krystin. (2022) Constrained Fourier estimation of short-term time-series gene expression data reduces noise and improves clustering and gene regulatory network predictions. BMC Bioinformatics
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Sinner, Peter; Kohlstedt, Michael; Kager, Julian; Wittmann, Christoph; Herwig, Christoph. (2022) Linking process and metabolic modelling for the estimation of carbon flux distribution in Corynebacterium glutamicum growth in spent sulfite liquor. IFAC-PapersOnLine
    Vitenskapelig artikkel
  • Weixler, D.; Berghoff, M; Ovchinnikov, Kirill; Reich, Sebastian; Goldbeck, Oliver; Seibold, Gerd M.. (2022) Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two-step process. Microbial Cell Factories
    Vitenskapelig artikkel
  • Weixler, Dominik; Berghoff, Max; Ovchinnikov, Kirill; Reich, Sebastian; Goldbeck, Oliver; Seibold, Gerd M.. (2022) Correction to: Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two‑step process (Microbial Cell Factories, (2022), 21, 1, (11), 10.1186/s12934-022-01739-y). Microbial Cell Factories
    Errata

2021

  • Duru, Ilhan Cem; Bucur, Florentina Ionela; Andreevskaya, Margarita; Ylinen, Anne; Crauwels, Peter; Grigore-Gurgu, Leontina. (2021) The complete genome sequence of Listeria monocytogenes strain S2542 and expression of selected genes under high-pressure processing. BMC Research Notes
    Vitenskapelig artikkel
  • Goldbeck, Oliver; Desef, Dominique N; Ovchinnikov, Kirill; Perez-Garcia, Fernando; Christmann, Jens; Sinner, Peter. (2021) Establishing recombinant production of pediocin PA-1 in Corynebacterium glutamicum. Metabolic Engineering
    Vitenskapelig artikkel
  • Nikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Hernandez-Herrero, Manuela; Crauwels, Peter; Riedel, Christian U.. (2021) A Diffusion Model to Quantify Membrane Repair Process in Listeria Monocytogenes Exposed to High Pressure Processing based on Fluorescence Microscopy Data . Frontiers in Microbiology
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Tuveri, Andrea; Seibold, Gerd M.; Bar, Nadav. (2021) Comparison of noninvasive, in-situ and external monitoring of microbial growth in fed-batch cultivations in Corynebacterium glutamicum. Biochemical engineering journal
    Vitenskapelig artikkel
  • Roessler, Fabienne K.; Benedikter, Birke J.; Schmeck, Bernd; Bar, Nadav. (2021) Novel computational analysis of large transcriptome datasets identifies sets of genes distinguishing chronic obstructive pulmonary disease from healthy lung samples. Scientific Reports
    Vitenskapelig artikkel
  • Tuveri, Andrea; Pérez-García, Fernando; Lira Parada, Pedro Antonio; Imsland, Lars; Bar, Nadav. (2021) Sensor fusion based on Extended and Unscented Kalman Filter for bioprocess monitoring. Journal of Process Control
    Vitenskapelig artikkel
  • Nikparvar, Bahareh; Andreevskaya, Margarita; Duru, Ilhan C.; Bucur, Florentina I.; Leontina, Grigore-Gurgu; Borda, Daniela. (2021) Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing. BMC Genomics
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Pettersen, Even; Biegler, Lorenz T.; Bar, Nadav S. (2021) Implications of dimensional analysis in bioreactor models: parameter estimation and identifiability. Chemical Engineering Journal
    Vitenskapelig artikkel
  • Duru, Ilhan Cem; Bucur, Florentina Ionela; Andreevskaya, Margarita; Nikparvar, Bahareh; Ylinen, Anne; Grigore-Gurgu, Leontina. (2021) High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes. BMC Genomics
    Vitenskapelig artikkel
  • Perez-Garcia, Fernando; Burgardt, Arthur; Kallman, Dina Riis; Wendisch, Volker F.; Bar, Nadav. (2021) Dynamic Co-Cultivation Process of Corynebacterium glutamicum Strains for the Fermentative Production of Riboflavin. Fermentation
    Vitenskapelig artikkel

2020

  • Duru, Ilhan Cem; Andreevskaya, Margarita; Laine, Pia; Rode, Tone Mari; Ylinen, Anne; Løvdal, Trond Karsten. (2020) Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing. BMC Genomics
    Vitenskapelig artikkel

2019

  • Franssen, Frits M. E.; Alter, Peter; Bar, Nadav; Benedikter, Birke J.; Iurato, Stella; Maier, Dieter. (2019) Personalized medicine for patients with COPD: where are we?. The International Journal of Chronic Obstructive Pulmonary Disease
    Vitenskapelig oversiktsartikkel/review
  • Nikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Hernandez, Manuela; Bar, Nadav. (2019) A Dynamic Model of Membrane Recovery Mechanisms in Bacteria following High Pressure Processing. IFAC-PapersOnLine
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Pettersen, Even; Bar, Nadav. (2019) Bioreactor Scaling Enhances Feedback Control Of Concentration, Rates, and Yields. IFAC-PapersOnLine
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Pettersen, Even; Perez-Garcia, Fernando; Bar, Nadav S. (2019) The development of a fed-batch Corynebacterium glutamicum fermentation model. IFAC-PapersOnLine
    Vitenskapelig artikkel

2018

  • Crauwels, Peter; Schäfer, Leonie; Weixler, Dominik; Bar, Nadav; Diep, Dzung B.; Riedel, Christian U.. (2018) Intracellular pHluorin as Sensor for Easy Assessment of Bacteriocin-Induced Membrane-Damage in Listeria monocytogenes. Frontiers in Microbiology
    Vitenskapelig artikkel

2017

  • Jayavelu, Naresh; Bar, Nadav. (2017) ISNCA: A new iterative approach for constrained matrix factorization methods. Journal of Process Control
    Vitenskapelig artikkel

2016

  • Bar, Nadav; Jayavelu, Naresh. (2016) New iterative approach (ISNCA) for constrained matrix factorization methods. IFAC-PapersOnLine
    Vitenskapelig artikkel

2015

  • Doni Jayavelu, Naresh; Bar, Nadav. (2015) Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line. BMC Genomics
    Vitenskapelig artikkel
  • Doni Jayavelu, Naresh; Aasgaard, Lasse Svenkerud; Bar, Nadav. (2015) Iterative sub-network component analysis enables reconstruction of large scale genetic networks. BMC Bioinformatics
    Vitenskapelig artikkel
  • Bar, Nadav; Skogestad, Sigurd; Marçal, Jose M.; Ulanovsky, Nachum; Yovel, Yossi. (2015) A Sensory-Motor Control Model of Animal Flight Explains Why Bats Fly Differently in Light Versus Dark. PLoS Biology
    Vitenskapelig artikkel
  • Skancke, Jørgen; Bar, Nadav; Kuiper, Martin; Hsu, Lilian M. (2015) Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription. Biochemistry
    Vitenskapelig artikkel

2014

  • Jayavelu, Naresh Doni; Bar, Nadav. (2014) Metabolomic studies of human gastric cancer: Review. World Journal of Gastroenterology (WJG)
    Vitenskapelig oversiktsartikkel/review
  • Bar, Nadav. (2014) Physiological and hormonal changes during prolonged starvation in fish. Canadian Journal of Fisheries and Aquatic Sciences
    Vitenskapelig artikkel
  • Doni, Jayavelu Naresh; Bar, Nadav. (2014) Dynamics of Regulatory Networks in Gastrin-Treated Adenocarcinoma Cells. PLOS ONE
    Vitenskapelig artikkel

2013

  • Doni Jayavelu, Naresh; Bar, Nadav. (2013) A Noise Removal Algorithm for Time Series Microarray Data. Springer
    Vitenskapelig Kapittel/Artikkel/Konferanseartikkel

2012

  • Djebali, S; Davis, CA; Merkel, Angelika; Dobin, A; Lassmann, T; Mortazavi, A. (2012) Landscape of transcription in human cells. Nature
    Vitenskapelig artikkel
  • Bar, Nadav; Volkoff, Helene. (2012) Adaptation of the Physiological, Endocrine, and Digestive System Functions to Prolonged Food Deprivation in Fish. Springer Publishing Company
    Vitenskapelig Kapittel/Artikkel/Konferanseartikkel

2010

  • Radde, Nicole; Bar, Nadav; Banaji, Murad. (2010) Graphical Methods for analysing feedback in biological networks - A survey. International Journal of Systems Science
    Vitenskapelig artikkel

2009

  • Bar, Nadav. (2009) Analysis of protein synthesis dynamic model in eukaryotic cells: Input control. Mathematical Biosciences
    Vitenskapelig artikkel
  • Bar, Nadav; Radde, Nicole. (2009) Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model. BMC Systems Biology
    Vitenskapelig artikkel

2008

  • Bar, Nadav; Lale, Rahmi. (2008) Modeling and Control of the Protein Synthesis process in Eukaryotic cells. Proceedings of the IEEE Conference on Decision & Control, including the Symposium on Adaptive Processes
    Vitenskapelig artikkel

2007

  • Bar, Nadav; Morris, David R.. (2007) Dynamic model of the process of protein synthesis in eukaryotic cells. Bulletin of Mathematical Biology
    Vitenskapelig artikkel
  • Bar, Nadav; Sigholt, Trygve; Shearer, Karl; Krogdahl, Åshild. (2007) A dynamic model of nutrient Pathways, growth and body composition in fish. Canadian Journal of Fisheries and Aquatic Sciences
    Vitenskapelig artikkel

2005

  • Imsland, Lars Struen; Bar, Nadav; Foss, Bjarne Anton. (2005) More Efficient Predictive Control. Automatica
    Vitenskapelig artikkel

Tidsskriftspublikasjoner

  • Waldschitz, Daniel; Neudert, Mark-Richard; Kitzmueller, Jakob; Lachmann, Johanna; Fonteyne, Arthur; Maes, Karolien. (2024) Robust, fully quantifiable and scalable bioprocess utilizing spent sulfite liquor with Corynebacterium glutamicum. Bioresource Technology
    Vitenskapelig artikkel
  • Tuveri, Andrea; Martins Nakama, Caroline Satye; Assumpcao Matias, Jose Otavio; Holck, Haakon Eng; Jäschke, Johannes; Imsland, Lars Struen. (2023) A regularized Moving Horizon Estimator for combined state and parameter estimation in a bioprocess experimental application. Computers and Chemical Engineering
    Vitenskapelig artikkel
  • Tuveri, Andrea; Eng Holck, Haakon; Nakama, Caroline Satye; Matias, José O.A.; Jäschke, Johannes; Imsland, Lars Struen. (2022) Bioprocess Monitoring: A Moving Horizon Estimation Experimental Application. IFAC-PapersOnLine
    Short communication
  • Ovchinnikov, Kirill; Oftedal, Thomas Førland; Reich, Sebastian J.; Bar, Nadav; Holo, Helge; Skaugen, Morten. (2022) Genome-assisted Identification, Purification, and Characterization of Bacteriocins. Bio-protocol
    Vitenskapelig artikkel
  • Bar, Nadav; Nikparvar, Bahareh; Doni Jayavelu, Naresh; Roessler, Fabienne Krystin. (2022) Constrained Fourier estimation of short-term time-series gene expression data reduces noise and improves clustering and gene regulatory network predictions. BMC Bioinformatics
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Sinner, Peter; Kohlstedt, Michael; Kager, Julian; Wittmann, Christoph; Herwig, Christoph. (2022) Linking process and metabolic modelling for the estimation of carbon flux distribution in Corynebacterium glutamicum growth in spent sulfite liquor. IFAC-PapersOnLine
    Vitenskapelig artikkel
  • Weixler, D.; Berghoff, M; Ovchinnikov, Kirill; Reich, Sebastian; Goldbeck, Oliver; Seibold, Gerd M.. (2022) Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two-step process. Microbial Cell Factories
    Vitenskapelig artikkel
  • Weixler, Dominik; Berghoff, Max; Ovchinnikov, Kirill; Reich, Sebastian; Goldbeck, Oliver; Seibold, Gerd M.. (2022) Correction to: Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two‑step process (Microbial Cell Factories, (2022), 21, 1, (11), 10.1186/s12934-022-01739-y). Microbial Cell Factories
    Errata
  • Duru, Ilhan Cem; Bucur, Florentina Ionela; Andreevskaya, Margarita; Ylinen, Anne; Crauwels, Peter; Grigore-Gurgu, Leontina. (2021) The complete genome sequence of Listeria monocytogenes strain S2542 and expression of selected genes under high-pressure processing. BMC Research Notes
    Vitenskapelig artikkel
  • Goldbeck, Oliver; Desef, Dominique N; Ovchinnikov, Kirill; Perez-Garcia, Fernando; Christmann, Jens; Sinner, Peter. (2021) Establishing recombinant production of pediocin PA-1 in Corynebacterium glutamicum. Metabolic Engineering
    Vitenskapelig artikkel
  • Nikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Hernandez-Herrero, Manuela; Crauwels, Peter; Riedel, Christian U.. (2021) A Diffusion Model to Quantify Membrane Repair Process in Listeria Monocytogenes Exposed to High Pressure Processing based on Fluorescence Microscopy Data . Frontiers in Microbiology
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Tuveri, Andrea; Seibold, Gerd M.; Bar, Nadav. (2021) Comparison of noninvasive, in-situ and external monitoring of microbial growth in fed-batch cultivations in Corynebacterium glutamicum. Biochemical engineering journal
    Vitenskapelig artikkel
  • Roessler, Fabienne K.; Benedikter, Birke J.; Schmeck, Bernd; Bar, Nadav. (2021) Novel computational analysis of large transcriptome datasets identifies sets of genes distinguishing chronic obstructive pulmonary disease from healthy lung samples. Scientific Reports
    Vitenskapelig artikkel
  • Tuveri, Andrea; Pérez-García, Fernando; Lira Parada, Pedro Antonio; Imsland, Lars; Bar, Nadav. (2021) Sensor fusion based on Extended and Unscented Kalman Filter for bioprocess monitoring. Journal of Process Control
    Vitenskapelig artikkel
  • Nikparvar, Bahareh; Andreevskaya, Margarita; Duru, Ilhan C.; Bucur, Florentina I.; Leontina, Grigore-Gurgu; Borda, Daniela. (2021) Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing. BMC Genomics
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Pettersen, Even; Biegler, Lorenz T.; Bar, Nadav S. (2021) Implications of dimensional analysis in bioreactor models: parameter estimation and identifiability. Chemical Engineering Journal
    Vitenskapelig artikkel
  • Duru, Ilhan Cem; Bucur, Florentina Ionela; Andreevskaya, Margarita; Nikparvar, Bahareh; Ylinen, Anne; Grigore-Gurgu, Leontina. (2021) High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes. BMC Genomics
    Vitenskapelig artikkel
  • Perez-Garcia, Fernando; Burgardt, Arthur; Kallman, Dina Riis; Wendisch, Volker F.; Bar, Nadav. (2021) Dynamic Co-Cultivation Process of Corynebacterium glutamicum Strains for the Fermentative Production of Riboflavin. Fermentation
    Vitenskapelig artikkel
  • Duru, Ilhan Cem; Andreevskaya, Margarita; Laine, Pia; Rode, Tone Mari; Ylinen, Anne; Løvdal, Trond Karsten. (2020) Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing. BMC Genomics
    Vitenskapelig artikkel
  • Franssen, Frits M. E.; Alter, Peter; Bar, Nadav; Benedikter, Birke J.; Iurato, Stella; Maier, Dieter. (2019) Personalized medicine for patients with COPD: where are we?. The International Journal of Chronic Obstructive Pulmonary Disease
    Vitenskapelig oversiktsartikkel/review
  • Nikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Hernandez, Manuela; Bar, Nadav. (2019) A Dynamic Model of Membrane Recovery Mechanisms in Bacteria following High Pressure Processing. IFAC-PapersOnLine
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Pettersen, Even; Bar, Nadav. (2019) Bioreactor Scaling Enhances Feedback Control Of Concentration, Rates, and Yields. IFAC-PapersOnLine
    Vitenskapelig artikkel
  • Lira Parada, Pedro Antonio; Pettersen, Even; Perez-Garcia, Fernando; Bar, Nadav S. (2019) The development of a fed-batch Corynebacterium glutamicum fermentation model. IFAC-PapersOnLine
    Vitenskapelig artikkel
  • Crauwels, Peter; Schäfer, Leonie; Weixler, Dominik; Bar, Nadav; Diep, Dzung B.; Riedel, Christian U.. (2018) Intracellular pHluorin as Sensor for Easy Assessment of Bacteriocin-Induced Membrane-Damage in Listeria monocytogenes. Frontiers in Microbiology
    Vitenskapelig artikkel
  • Jayavelu, Naresh; Bar, Nadav. (2017) ISNCA: A new iterative approach for constrained matrix factorization methods. Journal of Process Control
    Vitenskapelig artikkel
  • Bar, Nadav; Jayavelu, Naresh. (2016) New iterative approach (ISNCA) for constrained matrix factorization methods. IFAC-PapersOnLine
    Vitenskapelig artikkel
  • Doni Jayavelu, Naresh; Bar, Nadav. (2015) Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line. BMC Genomics
    Vitenskapelig artikkel
  • Doni Jayavelu, Naresh; Aasgaard, Lasse Svenkerud; Bar, Nadav. (2015) Iterative sub-network component analysis enables reconstruction of large scale genetic networks. BMC Bioinformatics
    Vitenskapelig artikkel
  • Bar, Nadav; Skogestad, Sigurd; Marçal, Jose M.; Ulanovsky, Nachum; Yovel, Yossi. (2015) A Sensory-Motor Control Model of Animal Flight Explains Why Bats Fly Differently in Light Versus Dark. PLoS Biology
    Vitenskapelig artikkel
  • Skancke, Jørgen; Bar, Nadav; Kuiper, Martin; Hsu, Lilian M. (2015) Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription. Biochemistry
    Vitenskapelig artikkel
  • Jayavelu, Naresh Doni; Bar, Nadav. (2014) Metabolomic studies of human gastric cancer: Review. World Journal of Gastroenterology (WJG)
    Vitenskapelig oversiktsartikkel/review
  • Bar, Nadav. (2014) Physiological and hormonal changes during prolonged starvation in fish. Canadian Journal of Fisheries and Aquatic Sciences
    Vitenskapelig artikkel
  • Doni, Jayavelu Naresh; Bar, Nadav. (2014) Dynamics of Regulatory Networks in Gastrin-Treated Adenocarcinoma Cells. PLOS ONE
    Vitenskapelig artikkel
  • Djebali, S; Davis, CA; Merkel, Angelika; Dobin, A; Lassmann, T; Mortazavi, A. (2012) Landscape of transcription in human cells. Nature
    Vitenskapelig artikkel
  • Radde, Nicole; Bar, Nadav; Banaji, Murad. (2010) Graphical Methods for analysing feedback in biological networks - A survey. International Journal of Systems Science
    Vitenskapelig artikkel
  • Bar, Nadav. (2009) Analysis of protein synthesis dynamic model in eukaryotic cells: Input control. Mathematical Biosciences
    Vitenskapelig artikkel
  • Bar, Nadav; Radde, Nicole. (2009) Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model. BMC Systems Biology
    Vitenskapelig artikkel
  • Bar, Nadav; Lale, Rahmi. (2008) Modeling and Control of the Protein Synthesis process in Eukaryotic cells. Proceedings of the IEEE Conference on Decision & Control, including the Symposium on Adaptive Processes
    Vitenskapelig artikkel
  • Bar, Nadav; Morris, David R.. (2007) Dynamic model of the process of protein synthesis in eukaryotic cells. Bulletin of Mathematical Biology
    Vitenskapelig artikkel
  • Bar, Nadav; Sigholt, Trygve; Shearer, Karl; Krogdahl, Åshild. (2007) A dynamic model of nutrient Pathways, growth and body composition in fish. Canadian Journal of Fisheries and Aquatic Sciences
    Vitenskapelig artikkel
  • Imsland, Lars Struen; Bar, Nadav; Foss, Bjarne Anton. (2005) More Efficient Predictive Control. Automatica
    Vitenskapelig artikkel

Del av bok/rapport

  • Doni Jayavelu, Naresh; Bar, Nadav. (2013) A Noise Removal Algorithm for Time Series Microarray Data. Springer
    Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
  • Bar, Nadav; Volkoff, Helene. (2012) Adaptation of the Physiological, Endocrine, and Digestive System Functions to Prolonged Food Deprivation in Fish. Springer Publishing Company
    Vitenskapelig Kapittel/Artikkel/Konferanseartikkel

Undervisning

Emner

  • TKP4195 - Bio-Systems Engineering
  • TKP4580 - Chemical Engineering, Specialization Project
  • TKP4581 - Chemical Engineering, Specialization Project
  • KP8130 - Systembiology, Modelling and Analysis
  • TKP4555 - Process Systems Engineering, Specialization Course

Formidling

BBC Tech Interview: How seaweed could be used to make sustainable antibiotics

Seaweed is increasingly being seen as a resource that can be used to manufacture goods sustainability. One lab in Norway is working on a new method to make antibiotics, by training bacteria to eat seaweed. Published in BBC 20th Dec. 2024

Gemini article: "Kunstig intelligens gir smartere bruk av tang og tare"

Tang og tare, eller makroalger, brukes i mange produkter, og kan bli enda viktigere framover. Kunstig intelligens kan hjelpe oss så vi unngår å overforbruke denne ressursen.

2024

  • Vitenskapelig foredrag
    Lima Carmel, Lipe; Bar, Nadav S. (2024) Simple worst case scenario back-off calculation for non-linear model predictive control. Nordic Process Control Workshop 2024-01-15 - 2024-01-17

2019

  • Vitenskapelig foredrag
    Nikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Fernandez, Manuella; Bar, Nadav. (2019) A Dynamic Model of Membrane Recovery Mechanisms in Bacteria following High Pressure Processing . IFAC Dynamics and Control of Process Systems, including Biosystems - 12th DYCOPS 2019 , Florianópolis 2019-04-23 - 2019-04-26
  • Vitenskapelig foredrag
    Bar, Nadav. (2019) Automatic control of bioreactor fermentation with Corynebacterium glutamicum using residual sugar streams. Center for Interdisciplinary Research (ZiF), Bielefeld Unive 9th International BIelefeld-CeBiTech research conference , Center for Interdisciplinary Research (ZiF), Bielefeld 2019-09-23 - 2019-09-25

2017

  • Vitenskapelig foredrag
    Bar, Nadav. (2017) The Iterative sub-network component analysis (ISNCA) relaxes network restrictions. Dept. of Chemical Engineering, IIT Madras, Workshop on Data Analysis for Model Identification using Time Series , Chennai 2017-01-07 - 2017-01-07

2016

  • Faglig foredrag
    Bar, Nadav; Jayavelu, Naresh. (2016) Dynamic Network Analysis Combined with Protein-Protein Interaction Knowledge Identified Short Feedback and Feed-Forward Circuits in Genetic Networks. IFAC 6th IFAC Conference on Foundations of Systems Biology in Engineering , Magdeburg 2016-10-09 - 2016-10-12

2015

  • Populærvitenskapelig foredrag
    Bar, Nadav. (2015) Den mystiske flaggermusen. Samarbeidsforum Researchers Night , NTNU 2015-12-08 -
  • Programdeltagelse
    Bar, Nadav. (2015) En dynamisk systembiologimodell forklarer forskjellen på flaggermusens flyvning i dagslys og mørket. Schrødingers katt, NRK Schrødingers katt, NRK [TV] 2015-05-19
  • Intervju
    Bar, Nadav. (2015) Slik flyr en flaggermus. Gemini Gemini [Fagblad] 2015-05-28

2012

  • Vitenskapelig foredrag
    Doni Jayavelu, Naresh; Bar, Nadav. (2012) Comparative study of EGF and HRG induced dynamic transcriptional networks in human subjects. ICSB 2012 - International Conference on Systems Biology , Paris 2012-11-28 -

2010

  • Vitenskapelig foredrag
    Bar, Nadav. (2010) Introduction to System Biology. CSIC , Vigo 2010-01-21 -
  • Vitenskapelig foredrag
    Bar, Nadav. (2010) Aquaculture Nutrition research. Hebrew University, Rehovot , Rehovot 2010-05-22 - 2010-05-23
  • Vitenskapelig foredrag
    Bar, Nadav. (2010) Prediction of body composition in Aquaculture. Seminar University of Beograd , Beograd 2010-07-06 -
  • Vitenskapelig foredrag
    Bar, Nadav. (2010) Modelling approach to aquaculture research. Guelph University , Guelph, Ontario 2010-09-06 - 2010-09-12
  • Vitenskapelig foredrag
    Bar, Nadav. (2010) Multiscale dynamic model of fish growth. SIAMB , Erlat 2010-05-24 - 2010-05-25
  • Vitenskapelig foredrag
    Bar, Nadav. (2010) Dynamic Modelling of Fish Growth. HAKI 2010-06-24 - 2010-06-25
  • Vitenskapelig foredrag
    Skancke, Jørgen; Lale, Rahmi; Bar, Nadav. (2010) Free Energy Caculations Give Insight Into The Process of Promoter Escape. 11th International Conference on Systems Biology , Edinburgh, Scotland 2010-10-11 - 2010-10-14
  • Poster
    Tripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology , Trondheim 2010-09-02 - 2010-09-04
  • Poster
    Tripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology , Edinburgh 2010-10-10 - 2010-10-16

2009

  • Vitenskapelig foredrag
    Radde, Nicole; Bar, Nadav; Tresch, Achim. (2009) A COMPARISON OF LIKELIHOODS FOR DYNAMIC STOCHASTIC MODELS OF BIOLOGICAL NETWORKS. Sixth International Workshop on Computational Systems Biology, WCSB 2009 , Århus 2009-06-10 - 2009-06-12

2008

  • Vitenskapelig foredrag
    Bar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process in Eukaryotic Cells. The Center for Control, Dynamical Systems, and Computation Winter 2008 Systems Biology Seminar Series , University of California at Santa Barbara 2008-02-29 - 2008-03-01
  • Vitenskapelig foredrag
    Bar, Nadav. (2008) Dynamic model of Fish Growth. Center systems Biology Stuttgart Systems biology meeting Stuttgart , Stuttgart 2008-11-07 - 2008-11-09
  • Vitenskapelig foredrag
    Bar, Nadav. (2008) Feedback Control in the Translational Process in Eukaryotic cells. KTH Systems biology meeting KTH , Stockholm 2008-10-16 - 2008-10-17
  • Vitenskapelig foredrag
    Bar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process in Eukaryotic Cells. Hamilton Institutte International Workshop on Systems Biology , Maynooth 2008-08-18 - 2008-08-21
  • Vitenskapelig foredrag
    Bar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process in Eukaryota. International Conference on Systems Biology , Gothenborg 2008-08-22 - 2008-08-29
  • Vitenskapelig foredrag
    Bar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process. Center systems Biology Stuttgart 1. International Workshop on Systems Biology , Stuttgart 2008-06-23 - 2008-06-24
  • Vitenskapelig foredrag
    Bar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process. Institute for Systems Theory and Automatic Control Kolloquium Technische Kybernetik , Stuttgart 2008-06-16 - 2008-06-17

2007

  • Vitenskapelig foredrag
    Bar, Nadav. (2007) Modeling of nutrient partitioning in fish production – A tool for identification of bottle necks. Plant Products in Aquafeed (PPA) Standardizing Research Approaches in the Evaluation of Plant Feedstuffs in Carnivorous Fish Diets , San Antonio, TX 2007-02-26 - 2007-03-03

2006

  • Vitenskapelig foredrag
    Bar, Nadav Skjøndal; Sigholt, Trygve. (2006) Dynamic model for fish growth. Norwegian conference for fish nutrition 2006-03-28 - 2006-03-29
  • Vitenskapelig foredrag
    Bar, Nadav Skjøndal; Sigholt, Trygve; Krogdahl, Åshild. (2006) A Dynamic model of Nutrient pathways, Growth and Body Composition in Fish. XII International Symposium on Fish Nutrition & Feeding , Biarritz 2006-05-28 - 2006-06-01
  • Vitenskapelig foredrag
    Bar, Nadav Skjøndal; Morris, David R.. (2006) Dynamic model of the process of Protein synthesis and Initiation control. Cold Spring Harbour Laboratory Translation control , NY 2006-09-06 - 2006-09-10

2004

  • Vitenskapelig foredrag
    Imsland, Lars Struen; Bar, Nadav; Foss, Bjarne Anton. (2004) A new algorithm for efficient MPC and a comparison with other schemes. ACC 2004 , Boston 2004-06-30 - 2004-07-02

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