Daniel Machado
Om
Daniel Machado joined NTNU in September 2020 as Associate Professor of Computational Biology. He has a Bsc/Msc in Mathematics and Computer Science (University of Minho, Portugal) and PhD in Bioengineering and Biotechnology (MIT-Portugal Program).
Kompetanseord
Forskning
Our research aims to unlock the potential of microbes to address multiple societal challenges. We use computational models to understand how microbes work together in their natural habitats. These so-called microbial communities are everywhere, with some playing an important role in the health of our bodies, and others in the health of our planet. We follow an interdisciplinary approach, combining computational models and biological data, which gives us the ability to design synthetic communities to apply in multiple biotechnological applications and create more sustainable industries.
For more information check our website:
Cell4Chem
SFI - Industrial Biotechnology:
ELIXIR Norway
Publikasjoner
2023
-
Røed, Elin Sandertun;
Moutinho Luz Machado, Carlos Daniel;
Márquez-Zavala, Elisa.
(2023)
Predicting Allosteric Regulation at Genome Scale.
Norges teknisk-naturvitenskapelige universitet
Norges teknisk-naturvitenskapelige universitet
Mastergradsoppgave
2022
-
Machado, Daniel;
Patil, Kiran R..
(2022)
Reply to: Erroneous predictions of auxotrophies by CarveMe.
Nature Ecology and Evolution
Brev til redaktøren
-
van den Berg, Naomi Iris;
Machado, Daniel;
Santos, Sophia;
Rocha, Isabel;
Chacón, Jeremy;
Harcombe, William.
(2022)
Ecological modelling approaches for predicting emergent properties in microbial communities.
Nature Ecology and Evolution
Vitenskapelig oversiktsartikkel/review
-
Cerca, José;
Petersen, Bent;
Lazaro-Guevara, José Miguel;
Rivera-Colón, Angel G.;
Birkeland, Siri;
Vizueta, Joel.
(2022)
The genomic basis of the plant island syndrome in Darwin’s giant daisies.
Nature Communications
Vitenskapelig artikkel
2021
-
Alloul, Abbas;
Spanoghe, Janne;
Machado, Daniel;
Vlaeminck, Siegfried E..
(2021)
Unlocking the genomic potential of aerobes and phototrophs for the production of nutritious and palatable microbial food without arable land or fossil fuels.
Microbial Biotechnology
Vitenskapelig artikkel
-
Shechter, Ksenija Radic;
Kafkia, Eleni;
Zirngibl, Katharina;
Gawrzak, Sylwia;
Alladin, Ashna;
Machado, Daniel.
(2021)
Metabolic memory underlying minimal residual disease in breast cancer.
Molecular Systems Biology
Vitenskapelig artikkel
-
Machado, Daniel;
Maistrenko, Oleksandr M.;
Andrejev, Sergej;
Kim, Yongkyu;
Bork, Peer;
Patil, Kaustubh R..
(2021)
Polarization of microbial communities between competitive and cooperative metabolism.
Nature Ecology and Evolution
Vitenskapelig artikkel
-
Blasche, Sonja;
Kim, Yongkyu;
Mars, Ruben A.T.;
Machado, Daniel;
Maansson, Maria;
Kafkia, Eleni.
(2021)
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community.
Nature Microbiology
Vitenskapelig artikkel
2020
-
Lieven, Christian;
Beber, Moritz E.;
Olivier, Brett G.;
Bergmann, Frank T.;
Ataman, Meric;
Babaei, Parizad.
(2020)
MEMOTE for standardized genome-scale metabolic model testing.
Nature Biotechnology
Vitenskapelig artikkel
Tidsskriftspublikasjoner
-
Machado, Daniel;
Patil, Kiran R..
(2022)
Reply to: Erroneous predictions of auxotrophies by CarveMe.
Nature Ecology and Evolution
Brev til redaktøren
-
van den Berg, Naomi Iris;
Machado, Daniel;
Santos, Sophia;
Rocha, Isabel;
Chacón, Jeremy;
Harcombe, William.
(2022)
Ecological modelling approaches for predicting emergent properties in microbial communities.
Nature Ecology and Evolution
Vitenskapelig oversiktsartikkel/review
-
Cerca, José;
Petersen, Bent;
Lazaro-Guevara, José Miguel;
Rivera-Colón, Angel G.;
Birkeland, Siri;
Vizueta, Joel.
(2022)
The genomic basis of the plant island syndrome in Darwin’s giant daisies.
Nature Communications
Vitenskapelig artikkel
-
Alloul, Abbas;
Spanoghe, Janne;
Machado, Daniel;
Vlaeminck, Siegfried E..
(2021)
Unlocking the genomic potential of aerobes and phototrophs for the production of nutritious and palatable microbial food without arable land or fossil fuels.
Microbial Biotechnology
Vitenskapelig artikkel
-
Shechter, Ksenija Radic;
Kafkia, Eleni;
Zirngibl, Katharina;
Gawrzak, Sylwia;
Alladin, Ashna;
Machado, Daniel.
(2021)
Metabolic memory underlying minimal residual disease in breast cancer.
Molecular Systems Biology
Vitenskapelig artikkel
-
Machado, Daniel;
Maistrenko, Oleksandr M.;
Andrejev, Sergej;
Kim, Yongkyu;
Bork, Peer;
Patil, Kaustubh R..
(2021)
Polarization of microbial communities between competitive and cooperative metabolism.
Nature Ecology and Evolution
Vitenskapelig artikkel
-
Blasche, Sonja;
Kim, Yongkyu;
Mars, Ruben A.T.;
Machado, Daniel;
Maansson, Maria;
Kafkia, Eleni.
(2021)
Metabolic cooperation and spatiotemporal niche partitioning in a kefir microbial community.
Nature Microbiology
Vitenskapelig artikkel
-
Lieven, Christian;
Beber, Moritz E.;
Olivier, Brett G.;
Bergmann, Frank T.;
Ataman, Meric;
Babaei, Parizad.
(2020)
MEMOTE for standardized genome-scale metabolic model testing.
Nature Biotechnology
Vitenskapelig artikkel
Rapport
-
Røed, Elin Sandertun;
Moutinho Luz Machado, Carlos Daniel;
Márquez-Zavala, Elisa.
(2023)
Predicting Allosteric Regulation at Genome Scale.
Norges teknisk-naturvitenskapelige universitet
Norges teknisk-naturvitenskapelige universitet
Mastergradsoppgave
Undervisning
Emner
Formidling
2023
-
PosterStallvik, Andrea; Moutinho Luz Machado, Carlos Daniel. (2023) Synthetic Microbial Communities for the Production of High-Value Compounds. Norwegian Biochemical Society 58th Norwegian Biochemical Society Meeting , Ås, Norway 2023-01-19 - 2023-01-22
2022
-
PosterTeixeira, Miguel; Machado, Daniel. (2022) CarveMe roadmap: expanding genome-scale metabolic models’ reconstruction. International Society for Microbial Ecology ISME 18 , Lausanne, Switzerland 2022-08-14 - 2022-08-19
-
PosterBurgos, Idun Maria Tokvam; Machado, Daniel. (2022) Modeling The Conversion Of Lignocellulose Into Medium-chain Carboxylates. International Society for Microbial Ecology ISME 18 , Lausanne, Switzerland 2022-08-14 - 2022-08-19