Nadav Bar
Om
Our mission is to control the microworld.
Combining biotechnology and control theory, we explore feedback control of microorganisms, particularly of bacteria. Our vision is to gain control over microbiological processes and to harness the power of microorganisms for research and industrial purposes.
WE ARE RECRUITING PHD STUDENTS! contact nadi.bar@ntnu.no
Awards:
- NEW! Coordinator of iCulture, EU horizon Europe project, 7.2 mill Eur, 2023-2027.
- Coordinator of iFermenter, EU H2020 BBI project, 5.6 mill Euro, 2018-2022.
- Coordinator of SafeFood, an EU project of 6 countries and 8 groups (about 2.5 mill euro, 2016-2019). - The main aim of the project is to turn food products (ready-to-eat products based on meat, fish and vegetables) safer and more durable, by reducing or inhibit the ability of Listeria monocytogenes to recover from high pressure processing (HPP). This can extend the shelf-life of food, increasing its resistance to food-related bacteria (by rendering the food “non-hospitable” for this type of bacteria) and decrease the amount of food waste from processing and throughout the food chain. Cutting edge biotechnological methods will be applied in this project.
-
Leader in ERA CoSysmed project, 5.1 mill NOK (2018-2022),
-
Head of the BioSystems feedback control real-time fermentation lab (MFCL)
-
BacPress: kvalifiseringsprosjekt Forskningsrådet (sammen med NMBU og Nofima, 2023-2025)
Forskning:
- Feedback control of bacteria (e.g. L. monocytogenes, C. glutamicum)
- Transcription og translation regulering (genutrykk) - modellering, analyse of kontroll
- Sensoriske-motoriske regulering (neuroscience)
- Genetiske nettverker
- cellular signaling (modellering av Listeria monocytogenes)
Current PhD students:
- Andrea Tuveri
- Fabienne Roessler
- Alex Wong
Former and Graduated students: (PhD level)
- Naresh D. Jayavelu, PhD
- Jørgen Skancke, PhD
- Haakon Holck
- Pedro Lira
- Bahareh Nikvarpar
Graduated Students (M.Sc level)
- 14 students
Publikasjoner
2023
-
Tuveri, Andrea;
Nakama, Caroline Satye Martins;
Matias, José O.A.;
Eng Holck, Haakon;
Jäschke, Johannes;
Imsland, Lars Struen;
Bar, Nadav S.
(2023)
A regularized Moving Horizon Estimator for combined state and parameter estimation in a bioprocess experimental application.
Computers and Chemical Engineering.
volum 172.
Vitenskapelig artikkel
2022
-
Bar, Nadav;
Nikparvar, Bahareh;
Doni Jayavelu, Naresh;
Roessler, Fabienne Krystin.
(2022)
Constrained Fourier estimation of short-term time-series gene expression data reduces noise and improves clustering and gene regulatory network predictions.
BMC Bioinformatics.
volum 23 (1).
Vitenskapelig artikkel
-
Lira Parada, Pedro Antonio;
Sinner, Peter;
Kohlstedt, Michael;
Kager, Julian;
Wittmann, Christoph;
Herwig, Christoph;
Bar, Nadav S.
(2022)
Linking process and metabolic modelling for the estimation of carbon flux distribution in Corynebacterium glutamicum growth in spent sulfite liquor.
IFAC-PapersOnLine.
volum 55 (7).
Vitenskapelig artikkel
-
Ovchinnikov, Kirill;
Oftedal, Thomas Førland;
Reich, Sebastian J.;
Bar, Nadav;
Holo, Helge;
Skaugen, Morten;
Riedel, Christian U.;
Diep, Dzung B..
(2022)
Genome-assisted Identification, Purification, and Characterization of Bacteriocins.
Bio-protocol.
volum 12 (14).
Vitenskapelig artikkel
-
Tuveri, Andrea;
Eng Holck, Haakon;
Nakama, Caroline Satye;
Matias, José O.A.;
Jäschke, Johannes;
Imsland, Lars Struen;
Bar, Nadav S.
(2022)
Bioprocess Monitoring: A Moving Horizon Estimation Experimental Application.
IFAC-PapersOnLine.
Short communication
-
Weixler, D.;
Berghoff, M;
Ovchinnikov, Kirill;
Reich, Sebastian;
Goldbeck, Oliver;
Seibold, Gerd M.;
Wittmann, Christoph;
Bar, Nadav S;
Eikmanns, Bernhard J;
Diep, Dzung B.;
Riedel, Christian U..
(2022)
Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two-step process.
Microbial Cell Factories.
volum 21 (11).
Vitenskapelig artikkel
-
Weixler, Dominik;
Berghoff, Max;
Ovchinnikov, Kirill;
Reich, Sebastian;
Goldbeck, Oliver;
Seibold, Gerd M.;
Wittmann, Christoph;
Bar, Nadav S;
Eikmanns, Bernhard J.;
Diep, Dzung B.;
Riedel, Christian U..
(2022)
Correction to: Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two‑step process (Microbial Cell Factories, (2022), 21, 1, (11), 10.1186/s12934-022-01739-y).
Microbial Cell Factories.
volum 21 (1).
Errata
2021
-
Duru, Ilhan Cem;
Bucur, Florentina Ionela;
Andreevskaya, Margarita;
Nikparvar, Bahareh;
Ylinen, Anne;
Grigore-Gurgu, Leontina;
Rode, Tone Mari;
Crauwels, Peter;
Laine, Pia;
Paulin, Lars;
Løvdal, Trond;
Riedel, Christian U.;
Bar, Nadav;
Borda, Daniela;
Nicolau, Anca Ioana;
Auvinen, Petri.
(2021)
High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes.
BMC Genomics.
volum 22 (1).
Vitenskapelig artikkel
-
Duru, Ilhan Cem;
Bucur, Florentina Ionela;
Andreevskaya, Margarita;
Ylinen, Anne;
Crauwels, Peter;
Grigore-Gurgu, Leontina;
Nikparvar, Bahareh;
Rode, Tone Mari;
Laine, Pia;
Paulin, Lars;
Løvdal, Trond;
Riedel, Christian U.;
Bar, Nadav;
Borda, Daniela;
Nicolau, Anca Ioana;
Auvinen, Petri.
(2021)
The complete genome sequence of Listeria monocytogenes strain S2542 and expression of selected genes under high-pressure processing.
BMC Research Notes.
volum 14 (1).
Vitenskapelig artikkel
-
Goldbeck, Oliver;
Desef, Dominique N;
Ovchinnikov, Kirill;
Perez-Garcia, Fernando;
Christmann, Jens;
Sinner, Peter;
Crauwels, Peter;
Weixler, Dominik;
Cao, Peng;
Becker, Judith;
Kohlstedt, Michael;
Kager, Julian;
Eikmanns, Bernhard J;
Seibold, Gerd M.;
Herwig, Christoph;
Wittmann, Christoph;
Bar, Nadav;
Diep, Dzung B.;
Riedel, Christian U..
(2021)
Establishing recombinant production of pediocin PA-1 in Corynebacterium glutamicum.
Metabolic Engineering.
volum 68.
Vitenskapelig artikkel
-
Lira Parada, Pedro Antonio;
Pettersen, Even;
Biegler, Lorenz T.;
Bar, Nadav S.
(2021)
Implications of dimensional analysis in bioreactor models: parameter estimation and identifiability.
Chemical Engineering Journal.
volum 417.
Vitenskapelig artikkel
-
Lira Parada, Pedro Antonio;
Tuveri, Andrea;
Seibold, Gerd M.;
Bar, Nadav.
(2021)
Comparison of noninvasive, in-situ and external monitoring of microbial growth in fed-batch cultivations in Corynebacterium glutamicum.
Biochemical engineering journal.
volum 170 (107989).
Vitenskapelig artikkel
-
Nikparvar, Bahareh;
Andreevskaya, Margarita;
Duru, Ilhan C.;
Bucur, Florentina I.;
Leontina, Grigore-Gurgu;
Borda, Daniela;
Nicolau, Anca I.;
Riedel, Christian U.;
Auvinen, Petri;
Bar, Nadav.
(2021)
Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing.
BMC Genomics.
volum 22 (266).
Vitenskapelig artikkel
-
Nikparvar, Bahareh;
Subires, Alicia;
Capellas, Marta;
Hernandez-Herrero, Manuela;
Crauwels, Peter;
Riedel, Christian U.;
Bar, Nadav.
(2021)
A Diffusion Model to Quantify Membrane Repair Process in Listeria Monocytogenes Exposed to High Pressure Processing based on Fluorescence Microscopy Data.
Frontiers in Microbiology.
volum 12.
Vitenskapelig artikkel
-
Perez-Garcia, Fernando;
Burgardt, Arthur;
Kallman, Dina Riis;
Wendisch, Volker F.;
Bar, Nadav.
(2021)
Dynamic Co-Cultivation Process of Corynebacterium glutamicum Strains for the Fermentative Production of Riboflavin.
Fermentation.
volum 7 (1).
Vitenskapelig artikkel
-
Roessler, Fabienne K.;
Benedikter, Birke J.;
Schmeck, Bernd;
Bar, Nadav.
(2021)
Novel computational analysis of large transcriptome datasets identifies sets of genes distinguishing chronic obstructive pulmonary disease from healthy lung samples.
Scientific Reports.
Vitenskapelig artikkel
-
Tuveri, Andrea;
Pérez-García, Fernando;
Lira Parada, Pedro Antonio;
Imsland, Lars;
Bar, Nadav.
(2021)
Sensor fusion based on Extended and Unscented Kalman Filter for bioprocess monitoring.
Journal of Process Control.
volum 106.
Vitenskapelig artikkel
2020
-
Duru, Ilhan Cem;
Andreevskaya, Margarita;
Laine, Pia;
Rode, Tone Mari;
Ylinen, Anne;
Løvdal, Trond Karsten;
Bar, Nadav;
Crauwels, Peter;
Riedel, Christian U.;
Bucur, Florentina Ionela;
Nicolau, Anca Ioana;
Auvinen, Petri.
(2020)
Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing.
BMC Genomics.
volum 21.
Vitenskapelig artikkel
2019
-
Franssen, Frits M. E.;
Alter, Peter;
Bar, Nadav;
Benedikter, Birke J.;
Iurato, Stella;
Maier, Dieter;
Maxheim, Michael;
Rössler, Fabienne;
Spruit, Martijn A.;
Vogelmeier, Claus F.;
Wouters, Emiel F.M.;
Schmeck, Bernd.
(2019)
Personalized medicine for patients with COPD: where are we?.
The International Journal of Chronic Obstructive Pulmonary Disease.
volum 14.
Vitenskapelig oversiktsartikkel/review
-
Lira Parada, Pedro Antonio;
Pettersen, Even;
Bar, Nadav.
(2019)
Bioreactor Scaling Enhances Feedback Control Of Concentration, Rates, and Yields.
IFAC-PapersOnLine.
volum 52 (1).
Vitenskapelig artikkel
-
Lira Parada, Pedro Antonio;
Pettersen, Even;
Perez-Garcia, Fernando;
Bar, Nadav S.
(2019)
The development of a fed-batch Corynebacterium glutamicum fermentation model.
IFAC-PapersOnLine.
volum 52 (26).
Vitenskapelig artikkel
-
Nikparvar, Bahareh;
Subires, Alicia;
Capellas, Marta;
Hernandez, Manuela;
Bar, Nadav.
(2019)
A Dynamic Model of Membrane Recovery Mechanisms in Bacteria following High Pressure Processing.
IFAC-PapersOnLine.
volum 52 (1).
Vitenskapelig artikkel
2018
-
Crauwels, Peter;
Schäfer, Leonie;
Weixler, Dominik;
Bar, Nadav;
Diep, Dzung B.;
Riedel, Christian U.;
Seibold, Gerd M..
(2018)
Intracellular pHluorin as Sensor for Easy Assessment of Bacteriocin-Induced Membrane-Damage in Listeria monocytogenes.
Frontiers in Microbiology.
volum 9.
Vitenskapelig artikkel
2017
-
Jayavelu, Naresh;
Bar, Nadav.
(2017)
ISNCA: A new iterative approach for constrained matrix factorization methods.
Journal of Process Control.
volum 60.
Vitenskapelig artikkel
2016
-
Bar, Nadav;
Jayavelu, Naresh.
(2016)
New iterative approach (ISNCA) for constrained matrix factorization methods.
IFAC-PapersOnLine.
volum 49 (7).
Vitenskapelig artikkel
2015
-
Bar, Nadav;
Skogestad, Sigurd;
Marçal, Jose M.;
Ulanovsky, Nachum;
Yovel, Yossi.
(2015)
A Sensory-Motor Control Model of Animal Flight Explains Why Bats Fly Differently in Light Versus Dark.
PLoS Biology.
volum 13 (1).
Vitenskapelig artikkel
-
Doni Jayavelu, Naresh;
Aasgaard, Lasse Svenkerud;
Bar, Nadav.
(2015)
Iterative sub-network component analysis enables reconstruction of large scale genetic networks.
BMC Bioinformatics.
volum 16 (1).
Vitenskapelig artikkel
-
Doni Jayavelu, Naresh;
Bar, Nadav.
(2015)
Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line.
BMC Genomics.
volum 16 (1).
Vitenskapelig artikkel
-
Skancke, Jørgen;
Bar, Nadav;
Kuiper, Martin;
Hsu, Lilian M.
(2015)
Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription.
Biochemistry.
volum 54 (28).
Vitenskapelig artikkel
2014
-
Bar, Nadav.
(2014)
Physiological and hormonal changes during prolonged starvation in fish.
Canadian Journal of Fisheries and Aquatic Sciences.
volum 71 (10).
Vitenskapelig artikkel
-
Doni, Jayavelu Naresh;
Bar, Nadav.
(2014)
Dynamics of Regulatory Networks in Gastrin-Treated Adenocarcinoma Cells.
PLOS ONE.
volum 9 (1).
Vitenskapelig artikkel
-
Jayavelu, Naresh Doni;
Bar, Nadav.
(2014)
Metabolomic studies of human gastric cancer: Review.
World Journal of Gastroenterology (WJG).
volum 20 (25).
Vitenskapelig oversiktsartikkel/review
2013
-
Doni Jayavelu, Naresh;
Bar, Nadav.
(2013)
A Noise Removal Algorithm for Time Series Microarray Data.
Progress in Artificial Intelligence.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
2012
-
Bar, Nadav;
Volkoff, Helene.
(2012)
Adaptation of the Physiological, Endocrine, and Digestive System Functions to Prolonged Food Deprivation in Fish.
Comparative Physiology of Fasting, Starvation, and Food Limitation.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
-
Djebali, S;
Davis, CA;
Merkel, Angelika;
Dobin, A;
Lassmann, T;
Mortazavi, A;
Tanzer, A;
Lagarde, J;
Lin, Wei;
Schlesinger, F;
Xue, CH;
Marinov, GK;
Khatun, Jainab;
Williams, Brian A;
Zaleski, C;
Rozowsky, J;
Röder, M;
Kokocinski, F;
Abdelhamid, RF;
Alioto, T;
Antoshechkin, I;
Baer, M.;
Bar, Nadav;
Batut, P;
Bell, K;
Bell, I;
Chakrabortty, S;
Chen, X;
Chrast, J;
Curado, J;
Derrien, T;
Drenkow, J;
Dumais, E;
Dumais, J;
Duttagupta, R;
Falconnet, E;
Fastuca, M;
Fejes-Toth, K;
Ferreira, P.;
Foissac, S;
Fullwood, MJ;
Gao, H;
Gonzalez, D;
Gordon, A;
Gunawardena, H;
Howald, C;
Jha, Sonali;
Johnson, R.;
Kapranov, P;
King, B;
Kingswood, C;
Luo, OJ;
Park, Eddie;
Persaud, K;
Preall, JB;
Ribeca, P;
Risk, B;
Robyr, D;
Sammeth, M;
Schaffer, L;
See, LH;
Shahab, A;
Skancke, Jørgen;
Suzuki, AM;
Takahashi, H;
Tilgner, H;
Trout, D;
Walters, N;
Wang, Huaien;
Wrobel, J;
Yu, YB;
Ruan, XA;
Hayashizaki, Yoshihide;
Harrow, J;
Gerstein, M;
Hubbard, Tim;
Reymond, A;
Antonarakis, SE;
Hannon, Gregory;
Giddings, MC;
Ruan, YJ;
Wold, B;
Carninci, Piero;
Guigo, R;
Gingeras, TR.
(2012)
Landscape of transcription in human cells.
Nature.
volum 489 (7414).
Vitenskapelig artikkel
2010
-
Radde, Nicole;
Bar, Nadav;
Banaji, Murad.
(2010)
Graphical Methods for analysing feedback in biological networks - A survey.
International Journal of Systems Science.
volum 41 (1).
Vitenskapelig artikkel
2009
-
Bar, Nadav.
(2009)
Analysis of protein synthesis dynamic model in eukaryotic cells: Input control.
Mathematical Biosciences.
volum 219 (2).
Vitenskapelig artikkel
-
Bar, Nadav;
Radde, Nicole.
(2009)
Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model.
BMC Systems Biology.
volum 3.
Vitenskapelig artikkel
2008
-
Bar, Nadav;
Lale, Rahmi.
(2008)
Modeling and Control of the Protein Synthesis process in Eukaryotic cells.
Proceedings of the IEEE Conference on Decision & Control, including the Symposium on Adaptive Processes.
Vitenskapelig artikkel
2007
-
Bar, Nadav;
Morris, David R..
(2007)
Dynamic model of the process of protein synthesis in eukaryotic cells.
Bulletin of Mathematical Biology.
volum 69.
Vitenskapelig artikkel
-
Bar, Nadav;
Sigholt, Trygve;
Shearer, Karl;
Krogdahl, Åshild.
(2007)
A dynamic model of nutrient Pathways, growth and body composition in fish.
Canadian Journal of Fisheries and Aquatic Sciences.
volum 64 (12).
Vitenskapelig artikkel
2005
-
Imsland, Lars Struen;
Bar, Nadav;
Foss, Bjarne Anton.
(2005)
More Efficient Predictive Control.
Automatica.
volum 41 (8).
Vitenskapelig artikkel
Tidsskriftspublikasjoner
-
Tuveri, Andrea;
Nakama, Caroline Satye Martins;
Matias, José O.A.;
Eng Holck, Haakon;
Jäschke, Johannes;
Imsland, Lars Struen;
Bar, Nadav S.
(2023)
A regularized Moving Horizon Estimator for combined state and parameter estimation in a bioprocess experimental application.
Computers and Chemical Engineering.
volum 172.
Vitenskapelig artikkel
-
Bar, Nadav;
Nikparvar, Bahareh;
Doni Jayavelu, Naresh;
Roessler, Fabienne Krystin.
(2022)
Constrained Fourier estimation of short-term time-series gene expression data reduces noise and improves clustering and gene regulatory network predictions.
BMC Bioinformatics.
volum 23 (1).
Vitenskapelig artikkel
-
Lira Parada, Pedro Antonio;
Sinner, Peter;
Kohlstedt, Michael;
Kager, Julian;
Wittmann, Christoph;
Herwig, Christoph;
Bar, Nadav S.
(2022)
Linking process and metabolic modelling for the estimation of carbon flux distribution in Corynebacterium glutamicum growth in spent sulfite liquor.
IFAC-PapersOnLine.
volum 55 (7).
Vitenskapelig artikkel
-
Ovchinnikov, Kirill;
Oftedal, Thomas Førland;
Reich, Sebastian J.;
Bar, Nadav;
Holo, Helge;
Skaugen, Morten;
Riedel, Christian U.;
Diep, Dzung B..
(2022)
Genome-assisted Identification, Purification, and Characterization of Bacteriocins.
Bio-protocol.
volum 12 (14).
Vitenskapelig artikkel
-
Tuveri, Andrea;
Eng Holck, Haakon;
Nakama, Caroline Satye;
Matias, José O.A.;
Jäschke, Johannes;
Imsland, Lars Struen;
Bar, Nadav S.
(2022)
Bioprocess Monitoring: A Moving Horizon Estimation Experimental Application.
IFAC-PapersOnLine.
Short communication
-
Weixler, D.;
Berghoff, M;
Ovchinnikov, Kirill;
Reich, Sebastian;
Goldbeck, Oliver;
Seibold, Gerd M.;
Wittmann, Christoph;
Bar, Nadav S;
Eikmanns, Bernhard J;
Diep, Dzung B.;
Riedel, Christian U..
(2022)
Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two-step process.
Microbial Cell Factories.
volum 21 (11).
Vitenskapelig artikkel
-
Weixler, Dominik;
Berghoff, Max;
Ovchinnikov, Kirill;
Reich, Sebastian;
Goldbeck, Oliver;
Seibold, Gerd M.;
Wittmann, Christoph;
Bar, Nadav S;
Eikmanns, Bernhard J.;
Diep, Dzung B.;
Riedel, Christian U..
(2022)
Correction to: Recombinant production of the lantibiotic nisin using Corynebacterium glutamicum in a two‑step process (Microbial Cell Factories, (2022), 21, 1, (11), 10.1186/s12934-022-01739-y).
Microbial Cell Factories.
volum 21 (1).
Errata
-
Duru, Ilhan Cem;
Bucur, Florentina Ionela;
Andreevskaya, Margarita;
Nikparvar, Bahareh;
Ylinen, Anne;
Grigore-Gurgu, Leontina;
Rode, Tone Mari;
Crauwels, Peter;
Laine, Pia;
Paulin, Lars;
Løvdal, Trond;
Riedel, Christian U.;
Bar, Nadav;
Borda, Daniela;
Nicolau, Anca Ioana;
Auvinen, Petri.
(2021)
High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes.
BMC Genomics.
volum 22 (1).
Vitenskapelig artikkel
-
Duru, Ilhan Cem;
Bucur, Florentina Ionela;
Andreevskaya, Margarita;
Ylinen, Anne;
Crauwels, Peter;
Grigore-Gurgu, Leontina;
Nikparvar, Bahareh;
Rode, Tone Mari;
Laine, Pia;
Paulin, Lars;
Løvdal, Trond;
Riedel, Christian U.;
Bar, Nadav;
Borda, Daniela;
Nicolau, Anca Ioana;
Auvinen, Petri.
(2021)
The complete genome sequence of Listeria monocytogenes strain S2542 and expression of selected genes under high-pressure processing.
BMC Research Notes.
volum 14 (1).
Vitenskapelig artikkel
-
Goldbeck, Oliver;
Desef, Dominique N;
Ovchinnikov, Kirill;
Perez-Garcia, Fernando;
Christmann, Jens;
Sinner, Peter;
Crauwels, Peter;
Weixler, Dominik;
Cao, Peng;
Becker, Judith;
Kohlstedt, Michael;
Kager, Julian;
Eikmanns, Bernhard J;
Seibold, Gerd M.;
Herwig, Christoph;
Wittmann, Christoph;
Bar, Nadav;
Diep, Dzung B.;
Riedel, Christian U..
(2021)
Establishing recombinant production of pediocin PA-1 in Corynebacterium glutamicum.
Metabolic Engineering.
volum 68.
Vitenskapelig artikkel
-
Lira Parada, Pedro Antonio;
Pettersen, Even;
Biegler, Lorenz T.;
Bar, Nadav S.
(2021)
Implications of dimensional analysis in bioreactor models: parameter estimation and identifiability.
Chemical Engineering Journal.
volum 417.
Vitenskapelig artikkel
-
Lira Parada, Pedro Antonio;
Tuveri, Andrea;
Seibold, Gerd M.;
Bar, Nadav.
(2021)
Comparison of noninvasive, in-situ and external monitoring of microbial growth in fed-batch cultivations in Corynebacterium glutamicum.
Biochemical engineering journal.
volum 170 (107989).
Vitenskapelig artikkel
-
Nikparvar, Bahareh;
Andreevskaya, Margarita;
Duru, Ilhan C.;
Bucur, Florentina I.;
Leontina, Grigore-Gurgu;
Borda, Daniela;
Nicolau, Anca I.;
Riedel, Christian U.;
Auvinen, Petri;
Bar, Nadav.
(2021)
Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing.
BMC Genomics.
volum 22 (266).
Vitenskapelig artikkel
-
Nikparvar, Bahareh;
Subires, Alicia;
Capellas, Marta;
Hernandez-Herrero, Manuela;
Crauwels, Peter;
Riedel, Christian U.;
Bar, Nadav.
(2021)
A Diffusion Model to Quantify Membrane Repair Process in Listeria Monocytogenes Exposed to High Pressure Processing based on Fluorescence Microscopy Data.
Frontiers in Microbiology.
volum 12.
Vitenskapelig artikkel
-
Perez-Garcia, Fernando;
Burgardt, Arthur;
Kallman, Dina Riis;
Wendisch, Volker F.;
Bar, Nadav.
(2021)
Dynamic Co-Cultivation Process of Corynebacterium glutamicum Strains for the Fermentative Production of Riboflavin.
Fermentation.
volum 7 (1).
Vitenskapelig artikkel
-
Roessler, Fabienne K.;
Benedikter, Birke J.;
Schmeck, Bernd;
Bar, Nadav.
(2021)
Novel computational analysis of large transcriptome datasets identifies sets of genes distinguishing chronic obstructive pulmonary disease from healthy lung samples.
Scientific Reports.
Vitenskapelig artikkel
-
Tuveri, Andrea;
Pérez-García, Fernando;
Lira Parada, Pedro Antonio;
Imsland, Lars;
Bar, Nadav.
(2021)
Sensor fusion based on Extended and Unscented Kalman Filter for bioprocess monitoring.
Journal of Process Control.
volum 106.
Vitenskapelig artikkel
-
Duru, Ilhan Cem;
Andreevskaya, Margarita;
Laine, Pia;
Rode, Tone Mari;
Ylinen, Anne;
Løvdal, Trond Karsten;
Bar, Nadav;
Crauwels, Peter;
Riedel, Christian U.;
Bucur, Florentina Ionela;
Nicolau, Anca Ioana;
Auvinen, Petri.
(2020)
Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing.
BMC Genomics.
volum 21.
Vitenskapelig artikkel
-
Franssen, Frits M. E.;
Alter, Peter;
Bar, Nadav;
Benedikter, Birke J.;
Iurato, Stella;
Maier, Dieter;
Maxheim, Michael;
Rössler, Fabienne;
Spruit, Martijn A.;
Vogelmeier, Claus F.;
Wouters, Emiel F.M.;
Schmeck, Bernd.
(2019)
Personalized medicine for patients with COPD: where are we?.
The International Journal of Chronic Obstructive Pulmonary Disease.
volum 14.
Vitenskapelig oversiktsartikkel/review
-
Lira Parada, Pedro Antonio;
Pettersen, Even;
Bar, Nadav.
(2019)
Bioreactor Scaling Enhances Feedback Control Of Concentration, Rates, and Yields.
IFAC-PapersOnLine.
volum 52 (1).
Vitenskapelig artikkel
-
Lira Parada, Pedro Antonio;
Pettersen, Even;
Perez-Garcia, Fernando;
Bar, Nadav S.
(2019)
The development of a fed-batch Corynebacterium glutamicum fermentation model.
IFAC-PapersOnLine.
volum 52 (26).
Vitenskapelig artikkel
-
Nikparvar, Bahareh;
Subires, Alicia;
Capellas, Marta;
Hernandez, Manuela;
Bar, Nadav.
(2019)
A Dynamic Model of Membrane Recovery Mechanisms in Bacteria following High Pressure Processing.
IFAC-PapersOnLine.
volum 52 (1).
Vitenskapelig artikkel
-
Crauwels, Peter;
Schäfer, Leonie;
Weixler, Dominik;
Bar, Nadav;
Diep, Dzung B.;
Riedel, Christian U.;
Seibold, Gerd M..
(2018)
Intracellular pHluorin as Sensor for Easy Assessment of Bacteriocin-Induced Membrane-Damage in Listeria monocytogenes.
Frontiers in Microbiology.
volum 9.
Vitenskapelig artikkel
-
Jayavelu, Naresh;
Bar, Nadav.
(2017)
ISNCA: A new iterative approach for constrained matrix factorization methods.
Journal of Process Control.
volum 60.
Vitenskapelig artikkel
-
Bar, Nadav;
Jayavelu, Naresh.
(2016)
New iterative approach (ISNCA) for constrained matrix factorization methods.
IFAC-PapersOnLine.
volum 49 (7).
Vitenskapelig artikkel
-
Bar, Nadav;
Skogestad, Sigurd;
Marçal, Jose M.;
Ulanovsky, Nachum;
Yovel, Yossi.
(2015)
A Sensory-Motor Control Model of Animal Flight Explains Why Bats Fly Differently in Light Versus Dark.
PLoS Biology.
volum 13 (1).
Vitenskapelig artikkel
-
Doni Jayavelu, Naresh;
Aasgaard, Lasse Svenkerud;
Bar, Nadav.
(2015)
Iterative sub-network component analysis enables reconstruction of large scale genetic networks.
BMC Bioinformatics.
volum 16 (1).
Vitenskapelig artikkel
-
Doni Jayavelu, Naresh;
Bar, Nadav.
(2015)
Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line.
BMC Genomics.
volum 16 (1).
Vitenskapelig artikkel
-
Skancke, Jørgen;
Bar, Nadav;
Kuiper, Martin;
Hsu, Lilian M.
(2015)
Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription.
Biochemistry.
volum 54 (28).
Vitenskapelig artikkel
-
Bar, Nadav.
(2014)
Physiological and hormonal changes during prolonged starvation in fish.
Canadian Journal of Fisheries and Aquatic Sciences.
volum 71 (10).
Vitenskapelig artikkel
-
Doni, Jayavelu Naresh;
Bar, Nadav.
(2014)
Dynamics of Regulatory Networks in Gastrin-Treated Adenocarcinoma Cells.
PLOS ONE.
volum 9 (1).
Vitenskapelig artikkel
-
Jayavelu, Naresh Doni;
Bar, Nadav.
(2014)
Metabolomic studies of human gastric cancer: Review.
World Journal of Gastroenterology (WJG).
volum 20 (25).
Vitenskapelig oversiktsartikkel/review
-
Djebali, S;
Davis, CA;
Merkel, Angelika;
Dobin, A;
Lassmann, T;
Mortazavi, A;
Tanzer, A;
Lagarde, J;
Lin, Wei;
Schlesinger, F;
Xue, CH;
Marinov, GK;
Khatun, Jainab;
Williams, Brian A;
Zaleski, C;
Rozowsky, J;
Röder, M;
Kokocinski, F;
Abdelhamid, RF;
Alioto, T;
Antoshechkin, I;
Baer, M.;
Bar, Nadav;
Batut, P;
Bell, K;
Bell, I;
Chakrabortty, S;
Chen, X;
Chrast, J;
Curado, J;
Derrien, T;
Drenkow, J;
Dumais, E;
Dumais, J;
Duttagupta, R;
Falconnet, E;
Fastuca, M;
Fejes-Toth, K;
Ferreira, P.;
Foissac, S;
Fullwood, MJ;
Gao, H;
Gonzalez, D;
Gordon, A;
Gunawardena, H;
Howald, C;
Jha, Sonali;
Johnson, R.;
Kapranov, P;
King, B;
Kingswood, C;
Luo, OJ;
Park, Eddie;
Persaud, K;
Preall, JB;
Ribeca, P;
Risk, B;
Robyr, D;
Sammeth, M;
Schaffer, L;
See, LH;
Shahab, A;
Skancke, Jørgen;
Suzuki, AM;
Takahashi, H;
Tilgner, H;
Trout, D;
Walters, N;
Wang, Huaien;
Wrobel, J;
Yu, YB;
Ruan, XA;
Hayashizaki, Yoshihide;
Harrow, J;
Gerstein, M;
Hubbard, Tim;
Reymond, A;
Antonarakis, SE;
Hannon, Gregory;
Giddings, MC;
Ruan, YJ;
Wold, B;
Carninci, Piero;
Guigo, R;
Gingeras, TR.
(2012)
Landscape of transcription in human cells.
Nature.
volum 489 (7414).
Vitenskapelig artikkel
-
Radde, Nicole;
Bar, Nadav;
Banaji, Murad.
(2010)
Graphical Methods for analysing feedback in biological networks - A survey.
International Journal of Systems Science.
volum 41 (1).
Vitenskapelig artikkel
-
Bar, Nadav.
(2009)
Analysis of protein synthesis dynamic model in eukaryotic cells: Input control.
Mathematical Biosciences.
volum 219 (2).
Vitenskapelig artikkel
-
Bar, Nadav;
Radde, Nicole.
(2009)
Long-term prediction of fish growth under varying ambient temperature using a multiscale dynamic model.
BMC Systems Biology.
volum 3.
Vitenskapelig artikkel
-
Bar, Nadav;
Lale, Rahmi.
(2008)
Modeling and Control of the Protein Synthesis process in Eukaryotic cells.
Proceedings of the IEEE Conference on Decision & Control, including the Symposium on Adaptive Processes.
Vitenskapelig artikkel
-
Bar, Nadav;
Morris, David R..
(2007)
Dynamic model of the process of protein synthesis in eukaryotic cells.
Bulletin of Mathematical Biology.
volum 69.
Vitenskapelig artikkel
-
Bar, Nadav;
Sigholt, Trygve;
Shearer, Karl;
Krogdahl, Åshild.
(2007)
A dynamic model of nutrient Pathways, growth and body composition in fish.
Canadian Journal of Fisheries and Aquatic Sciences.
volum 64 (12).
Vitenskapelig artikkel
-
Imsland, Lars Struen;
Bar, Nadav;
Foss, Bjarne Anton.
(2005)
More Efficient Predictive Control.
Automatica.
volum 41 (8).
Vitenskapelig artikkel
Del av bok/rapport
-
Doni Jayavelu, Naresh;
Bar, Nadav.
(2013)
A Noise Removal Algorithm for Time Series Microarray Data.
Progress in Artificial Intelligence.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
-
Bar, Nadav;
Volkoff, Helene.
(2012)
Adaptation of the Physiological, Endocrine, and Digestive System Functions to Prolonged Food Deprivation in Fish.
Comparative Physiology of Fasting, Starvation, and Food Limitation.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
Undervisning
Emner
Formidling
2019
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Vitenskapelig foredragBar, Nadav. (2019) Automatic control of bioreactor fermentation with Corynebacterium glutamicum using residual sugar streams. 9th International BIelefeld-CeBiTech research conference . Center for Interdisciplinary Research (ZiF), Bielefeld Unive; Center for Interdisciplinary Research (ZiF), Bielefeld. 2019-09-23 - 2019-09-25.
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Vitenskapelig foredragNikparvar, Bahareh; Subires, Alicia; Capellas, Marta; Fernandez, Manuella; Bar, Nadav. (2019) A Dynamic Model of Membrane Recovery Mechanisms in Bacteria following High Pressure Processing. Dynamics and Control of Process Systems, including Biosystems - 12th DYCOPS 2019 . IFAC; Florianópolis. 2019-04-23 - 2019-04-26.
2017
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Vitenskapelig foredragBar, Nadav. (2017) The Iterative sub-network component analysis (ISNCA) relaxes network restrictions. Workshop on Data Analysis for Model Identification using Time Series . Dept. of Chemical Engineering, IIT Madras,; Chennai. 2017-01-07 - 2017-01-07.
2016
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Faglig foredragBar, Nadav; Jayavelu, Naresh. (2016) Dynamic Network Analysis Combined with Protein-Protein Interaction Knowledge Identified Short Feedback and Feed-Forward Circuits in Genetic Networks. 6th IFAC Conference on Foundations of Systems Biology in Engineering . IFAC; Magdeburg. 2016-10-09 - 2016-10-12.
2015
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Populærvitenskapelig foredragBar, Nadav. (2015) Den mystiske flaggermusen. Researchers Night . Samarbeidsforum; NTNU. 2015-12-08.
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ProgramdeltagelseBar, Nadav. (2015) En dynamisk systembiologimodell forklarer forskjellen på flaggermusens flyvning i dagslys og mørket. Schrødingers katt, NRK [TV]. 2015-05-19.
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IntervjuBar, Nadav. (2015) Slik flyr en flaggermus. Gemini [Fagblad]. 2015-05-28.
2012
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Vitenskapelig foredragDoni Jayavelu, Naresh; Bar, Nadav. (2012) Comparative study of EGF and HRG induced dynamic transcriptional networks in human subjects. ICSB 2012 - International Conference on Systems Biology ; Paris. 2012-11-28.
2010
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Vitenskapelig foredragBar, Nadav. (2010) Aquaculture Nutrition research. Hebrew University, Rehovot ; Rehovot. 2010-05-22 - 2010-05-23.
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Vitenskapelig foredragBar, Nadav. (2010) Dynamic Modelling of Fish Growth. HAKI ; 2010-06-24 - 2010-06-25.
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Vitenskapelig foredragBar, Nadav. (2010) Introduction to System Biology. CSIC ; Vigo. 2010-01-21.
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Vitenskapelig foredragBar, Nadav. (2010) Modelling approach to aquaculture research. Guelph University ; Guelph, Ontario. 2010-09-06 - 2010-09-12.
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Vitenskapelig foredragBar, Nadav. (2010) Multiscale dynamic model of fish growth. SIAMB ; Erlat. 2010-05-24 - 2010-05-25.
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Vitenskapelig foredragBar, Nadav. (2010) Prediction of body composition in Aquaculture. Seminar University of Beograd ; Beograd. 2010-07-06.
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Vitenskapelig foredragSkancke, Jørgen; Lale, Rahmi; Bar, Nadav. (2010) Free Energy Caculations Give Insight Into The Process of Promoter Escape. 11th International Conference on Systems Biology ; Edinburgh, Scotland. 2010-10-11 - 2010-10-14.
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PosterTripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology ; Edinburgh. 2010-10-10 - 2010-10-16.
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PosterTripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology ; Trondheim. 2010-09-02 - 2010-09-04.
2009
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Vitenskapelig foredragRadde, Nicole; Bar, Nadav; Tresch, Achim. (2009) A COMPARISON OF LIKELIHOODS FOR DYNAMIC STOCHASTIC MODELS OF BIOLOGICAL NETWORKS. Sixth International Workshop on Computational Systems Biology, WCSB 2009 ; Århus. 2009-06-10 - 2009-06-12.
2008
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Vitenskapelig foredragBar, Nadav. (2008) Dynamic model of Fish Growth. Systems biology meeting Stuttgart . Center systems Biology Stuttgart; Stuttgart. 2008-11-07 - 2008-11-09.
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Vitenskapelig foredragBar, Nadav. (2008) Feedback Control in the Translational Process in Eukaryotic cells. Systems biology meeting KTH . KTH; Stockholm. 2008-10-16 - 2008-10-17.
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Vitenskapelig foredragBar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process. 1. International Workshop on Systems Biology . Center systems Biology Stuttgart; Stuttgart. 2008-06-23 - 2008-06-24.
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Vitenskapelig foredragBar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process. Kolloquium Technische Kybernetik . Institute for Systems Theory and Automatic Control; Stuttgart. 2008-06-16 - 2008-06-17.
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Vitenskapelig foredragBar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process in Eukaryota. International Conference on Systems Biology ; Gothenborg. 2008-08-22 - 2008-08-29.
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Vitenskapelig foredragBar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process in Eukaryotic Cells. Winter 2008 Systems Biology Seminar Series . The Center for Control, Dynamical Systems, and Computation; University of California at Santa Barbara. 2008-02-29 - 2008-03-01.
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Vitenskapelig foredragBar, Nadav. (2008) Modeling, Analysis and Control of the Translational Initiation Regulation Process in Eukaryotic Cells. International Workshop on Systems Biology . Hamilton Institutte; Maynooth. 2008-08-18 - 2008-08-21.
2007
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Vitenskapelig foredragBar, Nadav. (2007) Modeling of nutrient partitioning in fish production – A tool for identification of bottle necks. Standardizing Research Approaches in the Evaluation of Plant Feedstuffs in Carnivorous Fish Diets . Plant Products in Aquafeed (PPA); San Antonio, TX. 2007-02-26 - 2007-03-03.
2006
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Vitenskapelig foredragBar, Nadav Skjøndal; Sigholt, Trygve; Krogdahl, Åshild. (2006) A Dynamic model of Nutrient pathways, Growth and Body Composition in Fish. XII International Symposium on Fish Nutrition & Feeding ; Biarritz. 2006-05-28 - 2006-06-01.
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Vitenskapelig foredragBar, Nadav Skjøndal; Morris, David R.. (2006) Dynamic model of the process of Protein synthesis and Initiation control. Translation control . Cold Spring Harbour Laboratory; NY. 2006-09-06 - 2006-09-10.
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Vitenskapelig foredragBar, Nadav Skjøndal; Sigholt, Trygve. (2006) Dynamic model for fish growth. Norwegian conference for fish nutrition ; 2006-03-28 - 2006-03-29.
2004
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Vitenskapelig foredragImsland, Lars Struen; Bar, Nadav; Foss, Bjarne Anton. (2004) A new algorithm for efficient MPC and a comparison with other schemes. ACC 2004 ; Boston. 2004-06-30 - 2004-07-02.