Tjasa Kumelj
Om
Dr. Tjaša Kumelj received her Ph.D. degree in Biotechnology within Computational System Biology. Research work within PhD included Mechanistic Genome-scale Constraint-based Metabolic Modeling, Flux Balance Analysis, Omics Data Analyses, Metabolic Engineering, Computational Systems Medicine, Mechanistic Modeling, Statistical Modeling and Statistical Analysis, Norwegian University of Science and Technology, NTNU.
She has a M.Sc. degree in Chemistry with specialization within Biochemistry/Molecular Biology, University of Ljubljana, Slovenia.
Overall, research work included Mechanistic and Statistical Computational Modeling, and Computational Modeling applying Molecular Dynamics Simulation and Quantum Mechanics.
Research: research work (publications, posters, presentations)
Her present work integrates: Application and Development of Models in Precision Medicine, Clinical Database Development and Data Management (NTNU, Faculty of Medicine, Institute of Neurology and Movement Science, NorHead (Norwegian Researh Center for Headache)).
The projects she is currenly involved in, include:
1. NorHead Research Register and Biobank (Clinical database development, NorHead, NTNU)
2. Machine intelligence in HEADaches (MI-HEAD project, NorHead, NTNU): machine learning in classifing migraine from Genome-Wide Genotype data (GWAS), clinical data and health registry data, combining machine learning and genomic-based methods with the ultimate goal to study mechanistic interpretation of non-additive effects in headache disorders. In collaboration with University College London, UK and International Headache Genetic Consortium.
3. Applied Ethical Al on Nordic Patient Records (Anvendt Etisk AI på nordiske pasientjournaler, 2021.AI), NorHead, NTNU & Nordic Applied Ethical AI Consortium: The ultimate goal of the study is development of machine learning model to interpret the non-structured clinical notes and referrals for possible prediction medicine efficacy and possibly disease progression, applying federated machine learning approach, in collaboration with Aalborg University, Denmark & Z-Inspection-Tempere University, Finland.
4. Headache in Norway (Hodepine i Norge)-NorHEAD MiHEAD project; NTNU, NorHead in collaboration with University of Bergen(UiB) and Olso University Hospital (OUS).
Kompetanseord
- Bioinformatics
- Chemistry
- Complex Network Analysis
- Computational Mechanistic and Statistical Modeling
- Computational Systems Biology
- Data Science
- Genetical Epidemiology (EpiGenetics)
- Genome Scale Metabolic Modeling
- Molecular Biology and Biochemistry
- Omics Analysis
- Statistical Genetics and Functional Genomics
Forskning
1. Clinical DataBase Development and Development of Models in PrecisionMedicine and Data Management NTNU, Faculty of Medicine, Institut for Neuromedicine, NeuroØst, St.Olof Hospital, NorHead-Norwegian Research Center for Headache.
-Computational Systems Biology & Bioinformatics
-Computational Statistical & Mechanistic Modeling and Data Science
-Genome-scale Metabolic Modeling and Reconstruction of Genome-scale Metabolic Models
-Database development
-Omics analysis
-Genetic Epidemiology
-Statistical Genetics and Functional Genomics
2. Computational Systems Biology-Genome Scale Metabolic Modeling, Metabolic Engineering, Complex Network Analysis and Omics Analysis with Application in Biotechnology, Bioengineering and Biomedicine (NTNU, Professor Eivind Almaas Lab)-PhD degree.
3. Theoretical (Computational) Chemistry within Molecular Modleing and Computer Molecular Dynamics (MD) Simulation (NTNU)-medical research.
4. Experimental Chemistry, Biochemistry/Molecular Biology, Analytical Chemistry- Drug Discovery Unit (Pharmaceutical firm LEK (Sandoz), a generic part og Swiss Company Novartis).
Publikasjoner
Diagnosing migraine from genome-wide genotype data: a machine learning analysis
Brain
2025-05-06 | Journal article
Contirbutors: Antonios Danelakis, Tjaša Kumelj , Bendik S Winsvold , Marte Helene Bjørk , Parashkev Nachev , Manjit Matharu , Dominic Giles , Erling Tronvik , Helge Langseth , Anker Stubberud , The International Headache Genetics Consortium.
Forecasting migraine with time-series machine learning from mobile health data
2026
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Faisal, Fahim;
Poole, Amalie Christine;
Danelakis, Antonios;
Wergeland, Tore;
Bjørk, Marte-Helene;
Khanevski, Andrej N..
(2026)
Forecasting migraine with time-series machine learning from mobile health data.
The Journal of Headache and Pain
Vitenskapelig artikkel
2025
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Danelakis, Antonios;
Kumelj, Tjasa;
Winsvold, Bendik S.;
Bjørk, Marte Helene;
Nachev, Parashkev;
Matharu, Manjit.
(2025)
Diagnosing migraine from genome-wide genotype data: a machine learning analysis.
Brain
Vitenskapelig artikkel
2021
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Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology
Vitenskapelig artikkel
2020
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Sulheim, Snorre;
Kumelj, Tjasa;
Dissel, Dino van;
Salehzadeh-Yazdi, Ali;
Du, Chao;
Wezel, Gilles P. Van.
(2020)
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.
iScience
Vitenskapelig artikkel
2019
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Kumelj, Tjasa;
Sulheim, Snorre;
Wentzel, Alexander;
Almaas, Eivind.
(2019)
Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor.
Biotechnology Journal
Vitenskapelig artikkel
Tidsskriftspublikasjoner
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Faisal, Fahim;
Poole, Amalie Christine;
Danelakis, Antonios;
Wergeland, Tore;
Bjørk, Marte-Helene;
Khanevski, Andrej N..
(2026)
Forecasting migraine with time-series machine learning from mobile health data.
The Journal of Headache and Pain
Vitenskapelig artikkel
-
Danelakis, Antonios;
Kumelj, Tjasa;
Winsvold, Bendik S.;
Bjørk, Marte Helene;
Nachev, Parashkev;
Matharu, Manjit.
(2025)
Diagnosing migraine from genome-wide genotype data: a machine learning analysis.
Brain
Vitenskapelig artikkel
-
Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology
Vitenskapelig artikkel
-
Sulheim, Snorre;
Kumelj, Tjasa;
Dissel, Dino van;
Salehzadeh-Yazdi, Ali;
Du, Chao;
Wezel, Gilles P. Van.
(2020)
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.
iScience
Vitenskapelig artikkel
-
Kumelj, Tjasa;
Sulheim, Snorre;
Wentzel, Alexander;
Almaas, Eivind.
(2019)
Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor.
Biotechnology Journal
Vitenskapelig artikkel
Undervisning
Teaching and Leading Laboratory Course in Physical Chemistry in electrolytic conductivity and transference number at Deparment of Chemistry, NTNU (2006-2010)
Veiledning
Data Management and establishement of Broad Research Database within ISO-certified HUNT Cloud environment (NorHead - Norwegian Center for Headache Research, Faculty of Medicine, Institut of Neurology) (2022- )
Teaching and Leading Laboratory Course in Physical Chemistry in electrolytic conductivity and transference number at Department of Chemistry, NTNU, Norway (2006-2010)
Project leader , Drug Discovery Group, Pharmaceutical Company (part of Sandoz, Swiss Company), Slovenia (2002-2005)
Formidling
2025
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PosterBarlous, Benjamin Christopher; Danelakis, Antonios; Ekman, Petra; Gils, Mark van; Happonen, Antti P.; Hau, Maïlys Françoise. (2025) Federated Ethical Healthcare Learning Sandbox Project. FCAI AI Day 2025 , Dipoli 13.11.2025 - 13.11.2025
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PosterDanelakis, Antonios; Faisal, Fahim; Abildsnes, Håkon Kvisle; Winsvold, Bendik Kristoffer Slagsvold; Bjørk, Marte-Helene; Giles, Dominic. (2025) Data driven phenotyping of migraine and its correlation with ICHD-3 criteria and polygenic risk scores. European Headache Congress (EHC) 2025 , Lisbon 03.12.2025 - 06.12.2025
2024
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Vitenskapelig foredragDanelakis, Antonios; Stubberud, Anker; Winsvold, Bendik Kristoffer Slagsvold; bjørk, marte helene; Giles, Dominic; Nachev, Parashkev. (2024) Machine learning versus polygenic risk scoring as migraine predictors based on genome-wide genotype data. Migraine Trust International Symposium (MTIS) 2024 , London 05.08.2024 - 08.08.2024
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Vitenskapelig foredragDanelakis, Antonios; Abildsnes, Håkon Kvisle; Faisal, Fahim; Winsvold, Bendik Kristoffer Slagsvold; bjørk, marte helene; Giles, Dominic. (2024) Machine learning can predict migraine from genotype and non-headache clinical data with high accuracy. European Headache Congress (EHC) 2024 , Rotterdam 04.12.2024 - 07.12.2024
2021
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PosterSulheim, Snorre; Kumelj, Tjasa; Dissel, Dino van; Salehzadeh-Yazdi, Ali; Du, Chao; Wezel, Gilles P. Van. (2021) A systems comparison of Streptomyces coelicolor M1152 and M145 reveals major metabolic rewiring. COBRA 2021 , Virtuellt 01.03.2021 - 02.03.2021
2019
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PosterSulheim, Snorre; Kumelj, Tjasa; Salehzadeh-Yazdi, Ali; Dissel, Dino van; Chao, Du; Nieselt, Kay. (2019) An enzyme-constrained genome-scale metabolic model of Streptomyces coelicolor reveals global effects of gene cluster deletion and rpoB mutation. Digital Life Norway Conference 2019 , Tromsø 05.09.2019 - 06.09.2019
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Vitenskapelig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. 2nd Synthetic Biology for Natural Products Conference , Puerto Vallarta 02.06.2019 - 05.06.2019
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Vitenskapelig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. Functional Metageomics 2019 , Trondheim 16.06.2019 - 19.09.2019
2018
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PosterSulheim, Snorre; Kumelj, Tjasa; Sletta, Håvard; Wentzel, Alexander; Almaas, Eivind. (2018) Predicting phenotypes using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Digital Life Conference 2018 , Bergen 20.03.2018 - 21.03.2018
2017
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Vitenskapelig foredragSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Modelling living systems - From foundational problems to applications , Bergen 07.09.2017 - 08.09.2017
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PosterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) , Blacksburg, Virgina 06.08.2017 - 12.08.2017
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Faglig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Synthetic Biology of Natural Products , Hotel Fiesta Americana Condesa, Cancun 05.03.2017 - 08.03.2017
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Faglig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. BioProsp 2017, the 8th International Conference on Marine Biotechnology , UiT, Tromsø 08.03.2017 - 10.03.2017
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PosterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology , Gøteborg 18.06.2017 - 22.06.2017
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PosterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Methodologies for Digital Life - Focus on Metabolic Systems , Bergen 06.10.2017 -
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Vitenskapelig foredragSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Lunsj-seminar , Trondheim 20.09.2017 - 20.09.2017
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PosterKumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology , Gøteborg 18.06.2017 - 22.06.2017
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Vitenskapelig foredragKumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) , Blacksburg, Virgina 06.08.2017 - 12.08.2017
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PosterSulheim, Snorre; Almaas, Eivind; Kumelj, Tjasa. (2017) A genome-scale metabolic reconstruction of S. coelicolor. NORBIS annual national conference 2017 , Hillesøy, Troms 08.11.2017 - 10.11.2017
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Faglig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Centre for Digital Life Norway - Annual conference , Hotel Bristol, Oslo 20.03.2017 - 21.03.2017
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Faglig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Meeting with the ReDig project , SINTEF, RG Biotechnology 19.09.2017 - 19.09.2017
2009
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Vitenskapelig foredragKumelj, Tjasa; Åstrand, Per-Olof; Sanz-Navarro, Carlos F.. (2009) Towards a reactive force field for Fe(IV) with application to oxidative dealkylation of DNA. Bioinformatics Forum for Young Scientists (BFYS) April 24-26 2009, Trondheim/Selbu , Selbu 24.04.2009 - 26.04.2009