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Emil Karlsen

Emil Karlsen

Forsker
Institutt for bioteknologi og matvitenskap
Fakultet for naturvitenskap

emil.karlsen@ntnu.no
73413146 Kjemi 4, 4.059, Gløshaugen
Om Publikasjoner Formidling

Om

Tilhørighet:

AlmaasLab

 

Bakgrunn:

Master i bioteknologi, NTNU

Doktograd i bioteknologi, NTNU

Publikasjoner

  • Kronologisk
  • Etter kategori
  • Se alle publikasjoner i Cristin

2023

  • Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE.
    Vitenskapelig artikkel

2022

  • Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke; Garcia Calvo, Laura; Bruheim, Per; Almaas, Eivind. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE. volum 17 (1).
    Vitenskapelig artikkel

2021

  • Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology. volum 17 (5).
    Vitenskapelig artikkel
  • Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases. volum 21.
    Vitenskapelig artikkel

2018

  • Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics. volum 19 (467).
    Vitenskapelig artikkel

Tidsskriftspublikasjoner

  • Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE.
    Vitenskapelig artikkel
  • Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke; Garcia Calvo, Laura; Bruheim, Per; Almaas, Eivind. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE. volum 17 (1).
    Vitenskapelig artikkel
  • Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology. volum 17 (5).
    Vitenskapelig artikkel
  • Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases. volum 21.
    Vitenskapelig artikkel
  • Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics. volum 19 (467).
    Vitenskapelig artikkel

Formidling

2022

  • Poster
    Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2022) Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE ; Galway. 2022-09-28 - 2022-09-30.
  • Poster
    Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. DLN conference ; Trondheim. 2022-10-20 - 2022-10-21.
  • Poster
    Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. Cobra conference ; Galway. 2022-09-28 - 2022-09-30.

2021

  • Vitenskapelig foredrag
    Karlsen, Emil; Almaas, Eivind. (2021) Modeling bacteria for production of sustainable bioconcrete. Regular department seminar, IBT NTNU . Department of Biotechnology and Food Science (NTNU); NTNU Trondheim. 2021-04-28 - 2021-04-28.

2019

  • Poster
    Karlsen, Emil; Almaas, Eivind. (2019) Metabolic modeling for microbial production of bio-concrete. NBS Contact Meeting 2019 ; 2019-01-24 - 2019-01-27.
  • Poster
    Schulz, Christian; Karlsen, Emil; Kumar, Kanhaiya; Bartosova, Zdenka; Schmid, Jochen; Bruheim, Per; Almaas, Eivind. (2019) Measuring Biomass Composition for Modelling. DLN anual conference ; 2019-09-05 - 2019-09-06.
  • Poster
    Zehner, Jennifer Simone; Karlsen, Emil; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørensen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2019) The quest for bio-concrete: crossing disciplinary boundaries and wrangling bacteria to enable cleaner construction. DigitalLife 2019 ; 2019-09-05 - 2019-09-06.

2018

  • Vitenskapelig foredrag
    Almaas, Eivind; Karlsen, Emil; Schulz, Christian; Martyushenko, Nikolay. (2018) Dynamic FBA with Global Constraints on Cellular Protein Fraction. 5th Conference on Constraint-Based Reconstruction and Analysis ; Seattle. 2018-10-14 - 2018-10-16.
  • Vitenskapelig foredrag
    Karlsen, Emil; Almaas, Eivind. (2018) In silico evolution of plant-like structures. NetSci 2018 Satellite: Games on Networks . The Network Science Society; Paris. 2018-06-11 - 2018-06-15.
  • Vitenskapelig foredrag
    Karlsen, Emil; Almaas, Eivind. (2018) Modeling the developmental physiology of plants. 2nd annual BioCat conference . BioCat; Hurdal. 2018-06-04 - 2018-06-06.
  • Vitenskapelig foredrag
    Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automatic assembly of genome-scale metabolic draft reconstructions from KEGG data. NORBIS Annual Conference 2018 . NORBIS; Voss. 2018-10-17 - 2018-10-19.
  • Poster
    Karlsen, Emil; Zehner, Jennifer Simone; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-sørenssen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2018) Metabolic modelling, reactive transport modelling, and experimental verification of microbial-induced processes in the production of bio-concrete. DigitalLife 2018 . Senter for Digitalt Liv Norge; Bergen. 2018-03-20 - 2018-03-21.

2017

  • Vitenskapelig foredrag
    Karlsen, Emil; Almaas, Eivind. (2017) A method for dynamic flux balance analysis with global constraints. Methodologies for Digital Life - Focus on Metabolic Systems . Senter for Digitalt Liv Norge; Bergen. 2017-10-06 - 2017-10-06.
  • Poster
    Karlsen, Emil; Almaas, Eivind. (2017) Dynamic Flux Balance Analysis with Global Constraints. 3rd annual meeting of NORBIS . NORBIS; Tromsø. 2017-10-08 - 2017-10-10.
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