Emil Karlsen
Om
Publikasjoner
2023
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Karlsen, Emil;
Gylseth, Marianne;
Schulz, Christian;
Almaas, Eivind.
(2023)
A study of a diauxic growth experiment using an expanded dynamic flux balance framework.
PLOS ONE
Vitenskapelig artikkel
2022
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Simensen, Vetle;
Schulz, Christian;
Karlsen, Emil;
Bråtelund, Signe;
Burgos, Idun Maria Tokvam;
Thorfinnsdottir, Lilja Brekke.
(2022)
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling.
PLOS ONE
Vitenskapelig artikkel
2021
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Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William.
(2021)
Containing pandemics through targeted testing of households.
BMC Infectious Diseases
Vitenskapelig artikkel
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Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology
Vitenskapelig artikkel
2018
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Karlsen, Emil;
Schulz, Christian;
Almaas, Eivind.
(2018)
Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
BMC Bioinformatics
Vitenskapelig artikkel
Tidsskriftspublikasjoner
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Karlsen, Emil;
Gylseth, Marianne;
Schulz, Christian;
Almaas, Eivind.
(2023)
A study of a diauxic growth experiment using an expanded dynamic flux balance framework.
PLOS ONE
Vitenskapelig artikkel
-
Simensen, Vetle;
Schulz, Christian;
Karlsen, Emil;
Bråtelund, Signe;
Burgos, Idun Maria Tokvam;
Thorfinnsdottir, Lilja Brekke.
(2022)
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling.
PLOS ONE
Vitenskapelig artikkel
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William.
(2021)
Containing pandemics through targeted testing of households.
BMC Infectious Diseases
Vitenskapelig artikkel
-
Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology
Vitenskapelig artikkel
-
Karlsen, Emil;
Schulz, Christian;
Almaas, Eivind.
(2018)
Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
BMC Bioinformatics
Vitenskapelig artikkel
Formidling
2022
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PosterKarlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2022) Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE , Galway 2022-09-28 - 2022-09-30
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PosterSchulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. DLN conference , Trondheim 2022-10-20 - 2022-10-21
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PosterSchulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. Cobra conference , Galway 2022-09-28 - 2022-09-30
2021
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Vitenskapelig foredragKarlsen, Emil; Almaas, Eivind. (2021) Modeling bacteria for production of sustainable bioconcrete. Department of Biotechnology and Food Science (NTNU) Regular department seminar, IBT NTNU , NTNU Trondheim 2021-04-28 - 2021-04-28
2019
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PosterKarlsen, Emil; Almaas, Eivind. (2019) Metabolic modeling for microbial production of bio-concrete . NBS Contact Meeting 2019 2019-01-24 - 2019-01-27
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PosterZehner, Jennifer Simone; Karlsen, Emil; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørensen, Anders; Wentzel, Alexander. (2019) The quest for bio-concrete: crossing disciplinary boundaries and wrangling bacteria to enable cleaner construction. DigitalLife 2019 2019-09-05 - 2019-09-06
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PosterSchulz, Christian; Karlsen, Emil; Kumar, Kanhaiya; Bartosova, Zdenka; Schmid, Jochen; Bruheim, Per. (2019) Measuring Biomass Composition for Modelling. DLN anual conference 2019-09-05 - 2019-09-06
2018
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Vitenskapelig foredragKarlsen, Emil; Almaas, Eivind. (2018) In silico evolution of plant-like structures. The Network Science Society NetSci 2018 Satellite: Games on Networks , Paris 2018-06-11 - 2018-06-15
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Vitenskapelig foredragKarlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automatic assembly of genome-scale metabolic draft reconstructions from KEGG data. NORBIS NORBIS Annual Conference 2018 , Voss 2018-10-17 - 2018-10-19
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PosterKarlsen, Emil; Zehner, Jennifer Simone; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-sørenssen, Anders; Wentzel, Alexander. (2018) Metabolic modelling, reactive transport modelling, and experimental verification of microbial-induced processes in the production of bio-concrete. Senter for Digitalt Liv Norge DigitalLife 2018 , Bergen 2018-03-20 - 2018-03-21
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Vitenskapelig foredragKarlsen, Emil; Almaas, Eivind. (2018) Modeling the developmental physiology of plants. BioCat 2nd annual BioCat conference , Hurdal 2018-06-04 - 2018-06-06
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Vitenskapelig foredragAlmaas, Eivind; Karlsen, Emil; Schulz, Christian; Martyushenko, Nikolay. (2018) Dynamic FBA with Global Constraints on Cellular Protein Fraction. 5th Conference on Constraint-Based Reconstruction and Analysis , Seattle 2018-10-14 - 2018-10-16
2017
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Vitenskapelig foredragKarlsen, Emil; Almaas, Eivind. (2017) A method for dynamic flux balance analysis with global constraints. Senter for Digitalt Liv Norge Methodologies for Digital Life - Focus on Metabolic Systems , Bergen 2017-10-06 - 2017-10-06
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PosterKarlsen, Emil; Almaas, Eivind. (2017) Dynamic Flux Balance Analysis with Global Constraints. NORBIS 3rd annual meeting of NORBIS , Tromsø 2017-10-08 - 2017-10-10