Eivind Almaas

Om

Interessen min er grunnforskning innen systembiologi, med fokus på studier av komplekse biologiske nettverk, epidemiologisk spredning og cellulær metabolisme. I gruppen min benyttes både datasimuleringer og laboratoriestudier. Vi jobber også med anvendt forskning, spesielt med innen å utvikle alternativ til antibiotika ved laboratorie evolusjon av bakteriofag, og med datasimulering / laboratorie studier av interaksjoner mellom gjær og næringsstoffer / betingelser innen ølbrygging. For mer informasjon, se hjemmesiden til forskergruppen min.

Publikasjoner

2023

Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE.
Vitenskapelig artikkel

2022

Jouhten, Paula; Konstantinidis, Dimitrios; Pereira, Filipa; Andrejev, Sergej; Grkovska, Kristina; Castillo, Sandra; Ghiachi, Payam; Beltran, Gemma; Almaas, Eivind; Mas, Albert; Warringer, Jonas; Gonzalez, Ramon; Morales, Pilar; Patil, Kiran R.. (2022) Predictive evolution of metabolic phenotypes using model-designed environments. Molecular Systems Biology. volum 18 (10).
Vitenskapelig artikkel
Pettersen, Jakob Peder; Almaas, Eivind. (2022) csdR, an R package for differential co-expression analysis. BMC Bioinformatics. volum 23.
Vitenskapelig artikkel
Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke; Garcia Calvo, Laura; Bruheim, Per; Almaas, Eivind. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE. volum 17 (1).
Vitenskapelig artikkel
Simensen, Vetle; Seif, Yara; Almaas, Eivind. (2022) Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids. Frontiers in Molecular Biosciences. volum 9.
Vitenskapelig artikkel
Voigt, Andre; Omholt, Stig William; Almaas, Eivind. (2022) Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy. PLOS ONE. volum 17 (2).
Vitenskapelig artikkel
Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen; Skotheim, Rolf I.; Andersen, Sonja Benedikte; Zwiggelaar, Rosalie Theda Margien; Steigedal, Tonje S.; Lingjærde, Ole Christian; Sahlberg, Kristine Kleivi; Almaas, Eivind; Bjørkøy, Geir. (2022) NRF2 drives an oxidative stress response predictive of breast cancer. Free Radical Biology & Medicine. volum 184.
Vitenskapelig artikkel

2021

Bernstein, David B.; Sulheim, Snorre; Almaas, Eivind; Segrè, Daniel. (2021) Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome Biology. volum 22.
Vitenskapelig oversiktsartikkel/review
Joudeh, Nadeem; Saragliadis, Athanasios; Schulz, Christian; Voigt, Andre; Almaas, Eivind; Linke, Dirk. (2021) Transcriptomic Response Analysis of Escherichia coli to Palladium Stress. Frontiers in Microbiology. volum 12.
Vitenskapelig artikkel
Ofaim, Shany; Sulheim, Snorre; Almaas, Eivind; Sher, Daniel; Segrè, Daniel. (2021) Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus. Frontiers in Genetics. volum 12.
Vitenskapelig artikkel
Pettersen, Jakob Peder; Gundersen, Madeleine S.; Almaas, Eivind. (2021) Robust bacterial co-occurence community structures are independent of r- and K-selection history. Scientific Reports. volum 11.
Vitenskapelig artikkel
Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology. volum 17 (5).
Vitenskapelig artikkel
Simensen, Vetle; Voigt, Andre; Almaas, Eivind. (2021) High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66. Biotechnology and Bioengineering. volum 118.
Vitenskapelig artikkel
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. BMC Bioinformatics. volum 22.
Vitenskapelig artikkel
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0). BMC Bioinformatics. volum 22 (1).
Errata
Voigt, Andre; Almaas, Eivind. (2021) Vaksinering av voksne er ikke nok. nrk.no/ytring.
Kronikk
Voigt, Andre; Almaas, Eivind; Omholt, Stig William. (2021) Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger. Dagens næringsliv.
Kronikk
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases. volum 21.
Vitenskapelig artikkel
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8). BMC Infectious Diseases. volum 21 (1).
Errata

2020

Gysi, Deisy Morselli; de Miranda Fragoso, Tiago; Zebardast, Fatemeh; Bertoli, Wesley; Busskamp, Volker; Almaas, Eivind; Nowick, Katja. (2020) Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA). PLOS ONE. volum 15 (10).
Vitenskapelig artikkel
Hall, Martina; Kültz, Dietmar; Almaas, Eivind. (2020) Identification of key proteins involved in stickleback environmental adaptation with system-level analysis. Physiological Genomics. volum 52 (11).
Vitenskapelig artikkel
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Derfor bør norske myndigheter endre sin teststrategi. Gemini.
Kronikk
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi. Aftenposten (morgenutg. : trykt utg.).
Kronikk
Røkke, Gunvor Bjerkelund; Hohmann-Marriott, Martin Frank; Almaas, Eivind. (2020) An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models. PLOS ONE. volum 15 (2).
Vitenskapelig artikkel
Schulz, Christian; Almaas, Eivind. (2020) Genome-scale reconstructions to assess metabolic phylogeny and organism clustering. PLOS ONE.
Vitenskapelig artikkel
Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard J. (2020) Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. iScience. volum 23 (9).
Vitenskapelig artikkel

2019

Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2019) Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Biotechnology Journal.
Vitenskapelig artikkel
Martyushenko, Nikolay; Almaas, Eivind. (2019) ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models. Bioinformatics.
Vitenskapelig artikkel
Martyushenko, Nikolay; Almaas, Eivind. (2019) ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions. BMC Bioinformatics. volum 20.
Vitenskapelig artikkel
Neckmann, Ulrike; Wolowczyk, Camilla; Hall, Martina; Almaas, Eivind; Ren, Jiang; Zhao, Sen; Johannessen, Bjarne; Skotheim, Rolf I.; Bjørkøy, Geir; Dijke, Peter Ten; Holien, Toril. (2019) GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients. Cell Communication and Signaling. volum 17.
Vitenskapelig artikkel
Voigt, Andre; Almaas, Eivind. (2019) Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks. BMC Bioinformatics. volum 20 (58).
Vitenskapelig artikkel

2018

Gysi, Deisy Morselli; Voigt, Andre; Fragoso, Tiago de Miranda; Almaas, Eivind; Nowick, Katja. (2018) wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool. BMC Bioinformatics. volum 19 (392).
Vitenskapelig artikkel
Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics. volum 19 (467).
Vitenskapelig artikkel
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn; Otterlei, Marit. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio. volum 8 (7).
Vitenskapelig artikkel

2017

Eidsaa, Marius; Stubbs, Lisa; Almaas, Eivind. (2017) Comparative analysis of weighted gene co-expression networks in human and mouse. PLOS ONE. volum 12 (11).
Vitenskapelig artikkel
MacGillivray, Michael; Ko, Amy; Gruber, Emily; Sawyer, Miranda; Almaas, Eivind; Holder, Allen. (2017) Robust analysis of fluxes in genome-scale metabolic pathways. Scientific Reports. volum 7 (1).
Vitenskapelig artikkel
Voigt, Andre; Nowick, Katja; Almaas, Eivind. (2017) A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma. PLoS Computational Biology. volum 13 (9).
Vitenskapelig artikkel

2016

Cvijovic, Marija; Höfer, Thomas; Acimovic, Jure; Alberghina, Lilia; Almaas, Eivind; Besozzi, Daniela; Blomberg, Anders; Bretschneider, Till; Cascante, Marta; Collin, Olivier; de Atauri, Pedro; Depner, Cornelia; Dickinson, Robert; Dobrzynski, Maciej; Fleck, Christian; Garcia-Ojalvo, Jordi; Gonze, Didier; Hahn, Jens; Hess, Heide Marie; Hollmann, Susanne; Krantz, Marcus; Kummer, Ursula; Lundh, torbjorn; Martial, Gifta; Martins dos Santos, Vitor; Mauer-Oberthur, Angela; Regierer, Babette; Skene, Barbara; Stalidzans, Egils; Stelling, Jorg; Teusink, Bas; Workman, Christopher T.; Hohmann, Stefan. (2016) Strategies for structuring interdisciplinary education in Systems Biology: an European perspective. npj Systems Biology and Applications. volum 2.
Vitenskapelig artikkel
Eidsaa, Marius; Almaas, Eivind. (2016) Investigating the relationship between k-core and s-core network decompositions. Physica A: Statistical Mechanics and its Applications. volum 449.
Vitenskapelig artikkel
Kültz, Dietmar; Li, Johnathon; Paguio, Darlene; Pham, Tuan; Eidsaa, Marius; Almaas, Eivind. (2016) Population-specific renal proteomes of marine and freshwater three-spined sticklebacks. Journal of Proteomics. volum 135.
Vitenskapelig artikkel
Maleki, Susan; Almaas, Eivind; Zotchev, Sergey; Valla, Svein; Ertesvåg, Helga. (2016) Alginate Biosynthesis Factories in Pseudomonas fluorescens : Localization and Correlation with Alginate Production Level. Applied and Environmental Microbiology. volum 82 (4).
Vitenskapelig artikkel
Martyushenko, Nikolay; Johansen, Sigurd Hagen; Ghim, Cheol-Min; Almaas, Eivind. (2016) Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability. BMC Systems Biology. volum 10 (39).
Vitenskapelig artikkel

2015

Almaas, Eivind; Brautaset, Trygve. (2015) Syntetisk biologi. Mendels arv - Genetikkens æra.
publications.POPVIT_KAPITTEL
Ebrahim, Ali; Almaas, Eivind; Bauer, Eugen; Bordbar, Aarash; Burgard, Anthony P.; Chang, Roger L.; Dräger, Andreas; Famili, Iman; Feist, Adam M.; Fleming, Ronan M.T.; Fong, Stephen S.; Hatzimanikatis, Vassily; Holder, Allen; Hucka, Michael; Hyduke, Daniel; Jamshidi, Neema; Lee, Sang Yup; Le Novère, Nicolas; Lerman, Joshua A.; Lewis, Nathan E.; Ma, Ding; Mahadevan, Radhakrishnan; Maranas, Costas; Nagarajan, Harish; Navid, Ali; Nielsen, Jens; Nielsen, Lars K.; Nogales, Juan; Noronha, Alberto; Pal, Csaba; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Price, Nathan D.; Reed, Jennifer L.; Saunders, Michael; Senger, Ryan S.; Sonnenschein, Nikolaus; Sun, Yuekai; Thiele, Ines. (2015) Do genome-scale models need exact solvers or clearer standards?. Molecular Systems Biology. volum 11:831 (10).
Brev til redaktøren

2014

Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Marstrander Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) Competing in Synthetic biology.
Nettsider (opplysningsmateriale)
Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Marstrander Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) Only two days away from the competition.
Nettsider (opplysningsmateriale)
Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) We won the gold medal at the iGEM competiton.
Nettsider (opplysningsmateriale)

2013

Almaas, Eivind; Brevik, Iver Håkon. (2013) Possible sorting mechanism for microparticles in an evanescent field. Physical Review A. Atomic, Molecular, and Optical Physics (PRA). volum 87.
Vitenskapelig artikkel
Eidsaa, Marius; Almaas, Eivind. (2013) s-core network decomposition: A generalization of k-core analysis to weighted networks. Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. volum 88.
Vitenskapelig artikkel
Kucharova, Veronika; Aakvik, Trine; Almaas, Eivind; Naas, Adrian Ertsås; Brautaset, Trygve; Valla, Svein. (2013) Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR. PLOS ONE. volum 8 (6).
Vitenskapelig artikkel

2012

Almaas, Eivind; Bruheim, Per; Lale, Rahmi; Valla, Svein. (2012) Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism. Systems Microbiology - Current Topics and Applications.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
Navid, Ali; Almaas, Eivind. (2012) Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach. BMC Systems Biology. volum 6 (150).
Vitenskapelig artikkel
Navid, Ali; Almaas, Eivind. (2012) Yersinia pestis Metabolic Network. Yersinia : Systems biology and control.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
Zavareh, Zahra; Almaas, Eivind. (2012) Complex Network Analysis in Microbial Systems: Theory and Examples. Microbial Systems Biology: Methods and Protocols.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel

2010

Almaas, Eivind. (2010) Evolution of metabolic networks. Evolutionary genomics and systems biology.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
Almaas, Eivind. (2010) Sjimpansens gener - og våre. Gemini.
publications.INTERVJUSKRIFTL
Almaas, Eivind. (2010) SÅ lite skiller oss fra sjimpansene. VG : Verdens gang.
publications.INTERVJUSKRIFTL

2009

Ghim, CM; Almaas, Eivind. (2009) Two-Component Genetic Switch as a Synthetic Module with Tunable Stability. Physical Review Letters. volum 103 (2).
Vitenskapelig artikkel
Nowicka, Katja; Gernata, Tim; Almaas, Eivind; Stubbs, Lisa. (2009) Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proceedings of the National Academy of Sciences of the United States of America. volum 106 (52).
Vitenskapelig artikkel

Tidsskriftspublikasjoner

Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2023) A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE.
Vitenskapelig artikkel
Jouhten, Paula; Konstantinidis, Dimitrios; Pereira, Filipa; Andrejev, Sergej; Grkovska, Kristina; Castillo, Sandra; Ghiachi, Payam; Beltran, Gemma; Almaas, Eivind; Mas, Albert; Warringer, Jonas; Gonzalez, Ramon; Morales, Pilar; Patil, Kiran R.. (2022) Predictive evolution of metabolic phenotypes using model-designed environments. Molecular Systems Biology. volum 18 (10).
Vitenskapelig artikkel
Pettersen, Jakob Peder; Almaas, Eivind. (2022) csdR, an R package for differential co-expression analysis. BMC Bioinformatics. volum 23.
Vitenskapelig artikkel
Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke; Garcia Calvo, Laura; Bruheim, Per; Almaas, Eivind. (2022) Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE. volum 17 (1).
Vitenskapelig artikkel
Simensen, Vetle; Seif, Yara; Almaas, Eivind. (2022) Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids. Frontiers in Molecular Biosciences. volum 9.
Vitenskapelig artikkel
Voigt, Andre; Omholt, Stig William; Almaas, Eivind. (2022) Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy. PLOS ONE. volum 17 (2).
Vitenskapelig artikkel
Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen; Skotheim, Rolf I.; Andersen, Sonja Benedikte; Zwiggelaar, Rosalie Theda Margien; Steigedal, Tonje S.; Lingjærde, Ole Christian; Sahlberg, Kristine Kleivi; Almaas, Eivind; Bjørkøy, Geir. (2022) NRF2 drives an oxidative stress response predictive of breast cancer. Free Radical Biology & Medicine. volum 184.
Vitenskapelig artikkel
Bernstein, David B.; Sulheim, Snorre; Almaas, Eivind; Segrè, Daniel. (2021) Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome Biology. volum 22.
Vitenskapelig oversiktsartikkel/review
Joudeh, Nadeem; Saragliadis, Athanasios; Schulz, Christian; Voigt, Andre; Almaas, Eivind; Linke, Dirk. (2021) Transcriptomic Response Analysis of Escherichia coli to Palladium Stress. Frontiers in Microbiology. volum 12.
Vitenskapelig artikkel
Ofaim, Shany; Sulheim, Snorre; Almaas, Eivind; Sher, Daniel; Segrè, Daniel. (2021) Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus. Frontiers in Genetics. volum 12.
Vitenskapelig artikkel
Pettersen, Jakob Peder; Gundersen, Madeleine S.; Almaas, Eivind. (2021) Robust bacterial co-occurence community structures are independent of r- and K-selection history. Scientific Reports. volum 11.
Vitenskapelig artikkel
Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. (2021) Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology. volum 17 (5).
Vitenskapelig artikkel
Simensen, Vetle; Voigt, Andre; Almaas, Eivind. (2021) High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66. Biotechnology and Bioengineering. volum 118.
Vitenskapelig artikkel
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. BMC Bioinformatics. volum 22.
Vitenskapelig artikkel
Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. (2021) Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0). BMC Bioinformatics. volum 22 (1).
Errata
Voigt, Andre; Almaas, Eivind. (2021) Vaksinering av voksne er ikke nok. nrk.no/ytring.
Kronikk
Voigt, Andre; Almaas, Eivind; Omholt, Stig William. (2021) Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger. Dagens næringsliv.
Kronikk
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Containing pandemics through targeted testing of households. BMC Infectious Diseases. volum 21.
Vitenskapelig artikkel
Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. (2021) Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8). BMC Infectious Diseases. volum 21 (1).
Errata
Gysi, Deisy Morselli; de Miranda Fragoso, Tiago; Zebardast, Fatemeh; Bertoli, Wesley; Busskamp, Volker; Almaas, Eivind; Nowick, Katja. (2020) Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA). PLOS ONE. volum 15 (10).
Vitenskapelig artikkel
Hall, Martina; Kültz, Dietmar; Almaas, Eivind. (2020) Identification of key proteins involved in stickleback environmental adaptation with system-level analysis. Physiological Genomics. volum 52 (11).
Vitenskapelig artikkel
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Derfor bør norske myndigheter endre sin teststrategi. Gemini.
Kronikk
Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi. Aftenposten (morgenutg. : trykt utg.).
Kronikk
Røkke, Gunvor Bjerkelund; Hohmann-Marriott, Martin Frank; Almaas, Eivind. (2020) An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models. PLOS ONE. volum 15 (2).
Vitenskapelig artikkel
Schulz, Christian; Almaas, Eivind. (2020) Genome-scale reconstructions to assess metabolic phylogeny and organism clustering. PLOS ONE.
Vitenskapelig artikkel
Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard J. (2020) Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. iScience. volum 23 (9).
Vitenskapelig artikkel
Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2019) Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Biotechnology Journal.
Vitenskapelig artikkel
Martyushenko, Nikolay; Almaas, Eivind. (2019) ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models. Bioinformatics.
Vitenskapelig artikkel
Martyushenko, Nikolay; Almaas, Eivind. (2019) ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions. BMC Bioinformatics. volum 20.
Vitenskapelig artikkel
Neckmann, Ulrike; Wolowczyk, Camilla; Hall, Martina; Almaas, Eivind; Ren, Jiang; Zhao, Sen; Johannessen, Bjarne; Skotheim, Rolf I.; Bjørkøy, Geir; Dijke, Peter Ten; Holien, Toril. (2019) GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients. Cell Communication and Signaling. volum 17.
Vitenskapelig artikkel
Voigt, Andre; Almaas, Eivind. (2019) Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks. BMC Bioinformatics. volum 20 (58).
Vitenskapelig artikkel
Gysi, Deisy Morselli; Voigt, Andre; Fragoso, Tiago de Miranda; Almaas, Eivind; Nowick, Katja. (2018) wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool. BMC Bioinformatics. volum 19 (392).
Vitenskapelig artikkel
Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automated generation of genome-scale metabolic draft reconstructions based on KEGG. BMC Bioinformatics. volum 19 (467).
Vitenskapelig artikkel
Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn; Otterlei, Marit. (2018) The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio. volum 8 (7).
Vitenskapelig artikkel
Eidsaa, Marius; Stubbs, Lisa; Almaas, Eivind. (2017) Comparative analysis of weighted gene co-expression networks in human and mouse. PLOS ONE. volum 12 (11).
Vitenskapelig artikkel
MacGillivray, Michael; Ko, Amy; Gruber, Emily; Sawyer, Miranda; Almaas, Eivind; Holder, Allen. (2017) Robust analysis of fluxes in genome-scale metabolic pathways. Scientific Reports. volum 7 (1).
Vitenskapelig artikkel
Voigt, Andre; Nowick, Katja; Almaas, Eivind. (2017) A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma. PLoS Computational Biology. volum 13 (9).
Vitenskapelig artikkel
Cvijovic, Marija; Höfer, Thomas; Acimovic, Jure; Alberghina, Lilia; Almaas, Eivind; Besozzi, Daniela; Blomberg, Anders; Bretschneider, Till; Cascante, Marta; Collin, Olivier; de Atauri, Pedro; Depner, Cornelia; Dickinson, Robert; Dobrzynski, Maciej; Fleck, Christian; Garcia-Ojalvo, Jordi; Gonze, Didier; Hahn, Jens; Hess, Heide Marie; Hollmann, Susanne; Krantz, Marcus; Kummer, Ursula; Lundh, torbjorn; Martial, Gifta; Martins dos Santos, Vitor; Mauer-Oberthur, Angela; Regierer, Babette; Skene, Barbara; Stalidzans, Egils; Stelling, Jorg; Teusink, Bas; Workman, Christopher T.; Hohmann, Stefan. (2016) Strategies for structuring interdisciplinary education in Systems Biology: an European perspective. npj Systems Biology and Applications. volum 2.
Vitenskapelig artikkel
Eidsaa, Marius; Almaas, Eivind. (2016) Investigating the relationship between k-core and s-core network decompositions. Physica A: Statistical Mechanics and its Applications. volum 449.
Vitenskapelig artikkel
Kültz, Dietmar; Li, Johnathon; Paguio, Darlene; Pham, Tuan; Eidsaa, Marius; Almaas, Eivind. (2016) Population-specific renal proteomes of marine and freshwater three-spined sticklebacks. Journal of Proteomics. volum 135.
Vitenskapelig artikkel
Maleki, Susan; Almaas, Eivind; Zotchev, Sergey; Valla, Svein; Ertesvåg, Helga. (2016) Alginate Biosynthesis Factories in Pseudomonas fluorescens : Localization and Correlation with Alginate Production Level. Applied and Environmental Microbiology. volum 82 (4).
Vitenskapelig artikkel
Martyushenko, Nikolay; Johansen, Sigurd Hagen; Ghim, Cheol-Min; Almaas, Eivind. (2016) Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability. BMC Systems Biology. volum 10 (39).
Vitenskapelig artikkel
Ebrahim, Ali; Almaas, Eivind; Bauer, Eugen; Bordbar, Aarash; Burgard, Anthony P.; Chang, Roger L.; Dräger, Andreas; Famili, Iman; Feist, Adam M.; Fleming, Ronan M.T.; Fong, Stephen S.; Hatzimanikatis, Vassily; Holder, Allen; Hucka, Michael; Hyduke, Daniel; Jamshidi, Neema; Lee, Sang Yup; Le Novère, Nicolas; Lerman, Joshua A.; Lewis, Nathan E.; Ma, Ding; Mahadevan, Radhakrishnan; Maranas, Costas; Nagarajan, Harish; Navid, Ali; Nielsen, Jens; Nielsen, Lars K.; Nogales, Juan; Noronha, Alberto; Pal, Csaba; Palsson, Bernhard O.; Papin, Jason A.; Patil, Kiran R.; Price, Nathan D.; Reed, Jennifer L.; Saunders, Michael; Senger, Ryan S.; Sonnenschein, Nikolaus; Sun, Yuekai; Thiele, Ines. (2015) Do genome-scale models need exact solvers or clearer standards?. Molecular Systems Biology. volum 11:831 (10).
Brev til redaktøren
Almaas, Eivind; Brevik, Iver Håkon. (2013) Possible sorting mechanism for microparticles in an evanescent field. Physical Review A. Atomic, Molecular, and Optical Physics (PRA). volum 87.
Vitenskapelig artikkel
Eidsaa, Marius; Almaas, Eivind. (2013) s-core network decomposition: A generalization of k-core analysis to weighted networks. Physical Review E. Statistical, Nonlinear, and Soft Matter Physics. volum 88.
Vitenskapelig artikkel
Kucharova, Veronika; Aakvik, Trine; Almaas, Eivind; Naas, Adrian Ertsås; Brautaset, Trygve; Valla, Svein. (2013) Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR. PLOS ONE. volum 8 (6).
Vitenskapelig artikkel
Navid, Ali; Almaas, Eivind. (2012) Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach. BMC Systems Biology. volum 6 (150).
Vitenskapelig artikkel
Almaas, Eivind. (2010) Sjimpansens gener - og våre. Gemini.
publications.INTERVJUSKRIFTL
Almaas, Eivind. (2010) SÅ lite skiller oss fra sjimpansene. VG : Verdens gang.
publications.INTERVJUSKRIFTL
Ghim, CM; Almaas, Eivind. (2009) Two-Component Genetic Switch as a Synthetic Module with Tunable Stability. Physical Review Letters. volum 103 (2).
Vitenskapelig artikkel
Nowicka, Katja; Gernata, Tim; Almaas, Eivind; Stubbs, Lisa. (2009) Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain. Proceedings of the National Academy of Sciences of the United States of America. volum 106 (52).
Vitenskapelig artikkel

Del av bok/rapport

Almaas, Eivind; Brautaset, Trygve. (2015) Syntetisk biologi. Mendels arv - Genetikkens æra.
publications.POPVIT_KAPITTEL
Almaas, Eivind; Bruheim, Per; Lale, Rahmi; Valla, Svein. (2012) Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism. Systems Microbiology - Current Topics and Applications.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
Navid, Ali; Almaas, Eivind. (2012) Yersinia pestis Metabolic Network. Yersinia : Systems biology and control.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
Zavareh, Zahra; Almaas, Eivind. (2012) Complex Network Analysis in Microbial Systems: Theory and Examples. Microbial Systems Biology: Methods and Protocols.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
Almaas, Eivind. (2010) Evolution of metabolic networks. Evolutionary genomics and systems biology.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel

INFORMASJONSMATR

Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Marstrander Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) Competing in Synthetic biology.
Nettsider (opplysningsmateriale)
Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Marstrander Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) Only two days away from the competition.
Nettsider (opplysningsmateriale)
Lale, Rahmi; Drejer, Eivind Bøe; Hesthammer, Ronja; Omtvedt, Line; Lamb, Jacob Joseph; Røynestad, Pål; Augestad, Elias; Reehorst, Camilla; Almaas, Eivind; Hohmann-Marriott, Martin Frank. (2014) We won the gold medal at the iGEM competiton.
Nettsider (opplysningsmateriale)

Undervisning

TBT4165 - System Biology and Biological Networks
BT3801 - Tailored Biology: Potential, Limitations and Challenges for Humanity
BT8120 - Prokaryote Molecular Biology and Synthetic Biology
BT8118 - Metabolic Pathway Analysis

Formidling

Vaksinering av voksne er ikke nok

Vaksinering av voksne er ikke nok. Skal vi oppnå flokkimmunitet, er det helt nødvendig å vaksinere barn.

Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger

Store husholdninger gir mer smittespredning og bør prioriteres, særlig der smittetrykket er lavt. Det kan gi flokkimmunitet med færre vaksinedoser enn det dagens strategi vil kreve.

Derfor bør norske myndigheter endre sin teststrategi

Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.

Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi

Slik testing fanger opp asymptomatiske og symptomatiske tilfeller tidlig i sykdomsforløpet, og den fjerner behovet for smittesporing.

2023

Faglig foredrag

Almaas, Eivind. (2023) Insights from computational modelling of whole-cell metabolism. MISC Workshop . MISC exchange program; Oslo. 2023-02-06 - 2023-02-10.

2022

Poster

Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2022) Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE ; Galway. 2022-09-28 - 2022-09-30.
Poster

Pettersen, Jakob Peder; Almaas, Eivind. (2022) What Are Enzyme and Temperature Dependent Genome-Scale Models (etcGEMs) and How Do They Behave?. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) . Society for Biological Engineering; Galway. 2022-09-28 - 2022-09-30.
Poster

Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. DLN conference ; Trondheim. 2022-10-20 - 2022-10-21.
Poster

Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. Cobra conference ; Galway. 2022-09-28 - 2022-09-30.

2021

Vitenskapelig foredrag

Almaas, Eivind. (2021) How computational models of epidemic spread can inform decision-making dilemmas. The ethics of the Covid-19 pandemic . Programme for Applied Ethics, NTNU; Online. 2021-06-03 - 2021-06-04.
Vitenskapelig foredrag

Karlsen, Emil; Almaas, Eivind. (2021) Modeling bacteria for production of sustainable bioconcrete. Regular department seminar, IBT NTNU . Department of Biotechnology and Food Science (NTNU); NTNU Trondheim. 2021-04-28 - 2021-04-28.
Poster

Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2021) A systems comparison of Streptomyces coelicolor M1152 and M145 reveals major metabolic rewiring. COBRA 2021 . Aiche; Virtuellt. 2021-03-01 - 2021-03-02.

2020

Vitenskapelig foredrag

Almaas, Eivind. (2020) Stories of network analysis: Cellular metabolism to COVID-19. What is Life? Lecture series 2020 . Karolinska Institutet; Online video presentation. 2020-05-12 - 2020-05-12.
Poster

Hall, Martina; Skogholt, Anne Heidi; Almaas, Eivind. (2020) Network approach for identifying the most common paths of cardiovascular disease history. NetSci . The Network Science Society; Online (Rome). 2020-09-21 - 2020-09-25.
Poster

Pettersen, Jakob Peder; Vadstein, Olav; Almaas, Eivind. (2020) What do co-occurence network actually tell us? A case study. NetSci 2020 . The Network Science Society; Online. 2020-09-14 - 2020-09-27.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2020) Beer in the NMR - Who left Fingerprints?. NORBIS anual conference ; 2020-11-03 - 2020-11-03.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2020) Combining Theory and Praxis: Measuring (Microbial) Biomass Composition for Genome-Scale Metabolic Modelling. NBS contact meeting ; 2020-01-23 - 2020-01-26.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2020) First project meeting presentation. BedPan project meeting ; 2020-03-04 - 2020-03-05.
Vitenskapelig foredrag

Sulheim, Snorre; Fredrik A., Fossheim; Almaas, Eivind. (2020) Automatic reconstruction of metabolic pathways from annotated biosynthetic gene clusters. NORBIS annual national conference 2020 . NORBIS; Trondheim / online. 2020-11-03 - 2020-11-04.

2019

Vitenskapelig foredrag

Almaas, Eivind. (2019) Computational analysis & prediction of phenotypes.. and some experiments. Guest Lecture . Center for Complex Network Research, Northeastern University; Boston. 2019-11-15 - 2019-11-15.
Vitenskapelig foredrag

Almaas, Eivind. (2019) Genome to phenotypes through computational modeling. Guest Lecture . Prof. Bernhard Palsson; Dept. of Bioengineering, UC San Diego. 2019-09-11 - 2019-09-11.
Faglig foredrag

Almaas, Eivind. (2019) How to go on a sabbatical. IBT's weekly Department lunch . IBT; IBT's lunch room, NV Faculty, NTNU, Gløshaugen. 2019-08-21.
Vitenskapelig foredrag

Almaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture . Dr. Ali Navid; Lawrence Livermore National Laboratory. 2019-09-24 - 2019-09-24.
Vitenskapelig foredrag

Almaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture . Prof. Dietmar Kueltz; Dept. of Animal Science, UC Davis. 2019-09-23 - 2019-09-23.
Poster

Ertesvåg, Helga; Haslene-Hox, Hanne; Aasen, Inga Marie; Almaas, Eivind; Bartosova, Zdenka; Heggeset, Tonje Marita Bjerkan; Le, Simone Balzer; Rau, E-Ming; Stafsnes, Marit Hallvardsdotter; Voigt, Andre; Bruheim, Per. (2019) Industrial microbiology – 'omics methods and modelling as tools for process optimization. DigitalLife 2019 . Digital Life Norway; Tromsø. 2019-09-05 - 2019-09-06.
Vitenskapelig foredrag

Hall, Martina; Almaas, Eivind. (2019) Differential network analysis of subtypes and stages of breast cancer. Det 20. norske statistikermøtet . Norsk statistisk forening; Sola. 2019-06-15 - 2019-06-20.
Poster

Karlsen, Emil; Almaas, Eivind. (2019) Metabolic modeling for microbial production of bio-concrete. NBS Contact Meeting 2019 ; 2019-01-24 - 2019-01-27.
Faglig foredrag

Schulz, Christian; Almaas, Eivind. (2019) Beer'omics - Kveik for Christmas. IBT department Seminar ; 2019-12-18 - 2019-12-18.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2019) Combining Genome-Scale modelling with HUNT. Jebsen Center meeting ; 2019-10-25 - 2019-10-25.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2019) Genome-Scale modelling - No4. Bianual project meeting ; 2019-10-30 - 2019-10-30.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modeling: Metabolic engineering to increase production of nylon precursors in Pseudomonas. NBS meeting 2019 . NBS; 2019-01-24 - 2019-01-27.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modelling 3. Bianual project meeting ; 2019-03-11 - 2019-03-11.
Poster

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Fish under stress - Systems biology and mathematical modelling ; 2019-05-24 - 2019-05-28.
Poster

Schulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Multivariate analysis of omics data with special emphasis on metabolomics Summerschool ; 2019-05-17 - 2019-05-21.
Poster

Schulz, Christian; Karlsen, Emil; Kumar, Kanhaiya; Bartosova, Zdenka; Schmid, Jochen; Bruheim, Per; Almaas, Eivind. (2019) Measuring Biomass Composition for Modelling. DLN anual conference ; 2019-09-05 - 2019-09-06.
Vitenskapelig foredrag

Simensen, Vetle; Almaas, Eivind. (2019) Reconstruction of a genome-scale metabolic model for the analysis of the oleaginous phenotype of Aurantiochytrium sp. T66. NORBIS annual conference . NORBIS; Oscarsborg Festning. 2019-09-30 - 2019-10-02.
Poster

Simensen, Vetle; Voigt, Andre; Almaas, Eivind. (2019) Genome-scale modeling of Auranthochytrium sp. T66 for increased fatty acid production. Digital Life 2019 . Digital Life Norway; Tromsø. 2019-09-05 - 2019-09-05.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Salehzadeh-Yazdi, Ali; van Dissel, Dino; Chao, Du; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2019) An enzyme-constrained genome-scale metabolic model of Streptomyces coelicolor reveals global effects of gene cluster deletion and rpoB mutation. Digital Life Norway Conference 2019 . Digital Life Norway; Tromsø. 2019-09-05 - 2019-09-06.
Faglig foredrag

Voigt, Andre; Almaas, Eivind. (2019) Online platform for biological network analysis in ELIXIR. NBS Contact Meeting, 2019 . Norwegian Biochemical Society; Røros. 2019-01-25 - 2019-01-25.
Vitenskapelig foredrag

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien S.; Mead, David A.; Medema, Marnix H.; Navarro Munoz, Jorge; Fernandez-Guerra, Antonio; van Dissel, Dino; Hulst, Mandy; Chao, Du; Van Wezel, Gilles P.; Wang, Hao; Kerkhoven, Eduard; Salehzadeh-Yazdi, Ali; Wolkenhauer, Olaf; Nieselt, Kay; Iftime, Dumitrita; Bera, Agnieszka; Hinder, Markus; Stegmann, Evi; Wohlleben, Wolfgang; Ellingsen, Trond Erling; Sletta, Håvard. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. 2nd Synthetic Biology for Natural Products Conference . Fusion Conferences; Puerto Vallarta. 2019-06-02 - 2019-06-05.
Vitenskapelig foredrag

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien S.; Mead, David A.; Medema, Marnix H.; Navarro Munoz, Jorge; Fernandez-Guerra, Antonio; van Dissel, Dino; Hulst, Mandy; Du, Chao; Van Wezel, Gilles P.; Wang, Hao; Kerkhoven, Eduard; Salehzadeh-Yazdi, Ali; Wolkenhauer, Olaf; Nieselt, Kay; Iftime, Dumitrita; Bera, Agnieszka; Hinder, Markus; Stegmann, Evi; Wohlleben, Wolfgang; Ellingsen, Trond Erling; Sletta, Håvard. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. Functional Metageomics 2019 . SINTEF/NTNU; Trondheim. 2019-06-16 - 2019-09-19.
Poster

Zehner, Jennifer Simone; Karlsen, Emil; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørensen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2019) The quest for bio-concrete: crossing disciplinary boundaries and wrangling bacteria to enable cleaner construction. DigitalLife 2019 ; 2019-09-05 - 2019-09-06.

2018

Vitenskapelig foredrag

Almaas, Eivind. (2018) Differential network analysis as approach to study human disease. Systems Biology for Industrial Biotechnology . ERASysAPP workshop combined with the DLN Volterra lecture; Trondheim. 2018-11-09 - 2018-11-09.
Vitenskapelig foredrag

Almaas, Eivind. (2018) Genome-scale metabolic models with uncertainty and global constraints. International Study Group for Systems Biology (ISGSB) Conference 2018 . International Study Group for Systems Biology (ISGSB); Tromsø. 2018-09-24 - 2018-09-28.
Vitenskapelig foredrag

Almaas, Eivind; Karlsen, Emil; Schulz, Christian; Martyushenko, Nikolay. (2018) Dynamic FBA with Global Constraints on Cellular Protein Fraction. 5th Conference on Constraint-Based Reconstruction and Analysis ; Seattle. 2018-10-14 - 2018-10-16.
Poster

Hall, Martina; Almaas, Eivind. (2018) Comparison of statistical methods and network analysis for detecting genes related to breast cancer. DLN Annual Conference . DLN; Bergen. 2018-03-20 - 2018-03-21.
Vitenskapelig foredrag

Hall, Martina; Almaas, Eivind. (2018) Constructing gene co-expression network using penalized regression. NetSci . The Network Science Society; Paris. 2018-06-01 - 2018-06-15.
Vitenskapelig foredrag

Karlsen, Emil; Almaas, Eivind. (2018) In silico evolution of plant-like structures. NetSci 2018 Satellite: Games on Networks . The Network Science Society; Paris. 2018-06-11 - 2018-06-15.
Vitenskapelig foredrag

Karlsen, Emil; Almaas, Eivind. (2018) Modeling the developmental physiology of plants. 2nd annual BioCat conference . BioCat; Hurdal. 2018-06-04 - 2018-06-06.
Vitenskapelig foredrag

Karlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automatic assembly of genome-scale metabolic draft reconstructions from KEGG data. NORBIS Annual Conference 2018 . NORBIS; Voss. 2018-10-17 - 2018-10-19.
Poster

Karlsen, Emil; Zehner, Jennifer Simone; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-sørenssen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2018) Metabolic modelling, reactive transport modelling, and experimental verification of microbial-induced processes in the production of bio-concrete. DigitalLife 2018 . Senter for Digitalt Liv Norge; Bergen. 2018-03-20 - 2018-03-21.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2018) Combining phylogeny with genome-scale metabolic networks: Another tree of life and infinite engineering possibilities?. Micobial Biotechnology Division meeting ; 2018-06-22 - 2018-06-22.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2018) Cross-organism-wide network comparison to identify conserved gene functions. Digital Life Annual PhD School meeting ; 2018-05-30 - 2018-06-01.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2018) Discovery of conserved functions within cross-organism-wide genes using reaction networks. BioCat annual conference ; 2018-06-03 - 2018-06-06.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2018) From Zero to Hero: The Story of Modeling Pseudomonas. Department meeting IBT and Food Science ; 2018-05-16 - 2018-05-16.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2018) Genome-Scale Metabolic Modeling for Biotechnology: What We Need to Conduct Our Magic. Micobial Biotechnology Division meeting ; 2018-03-09 - 2018-03-09.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2018) Genome-Scale metabolic modelling. Bianual PolyBugs project meeting ; Trondheim. 2018-08-13 - 2018-08-13.
Poster

Schulz, Christian; Almaas, Eivind. (2018) Genome-scale metabolic reconstructions for phylogeny?. COBRA conference 2018 ; Seattle, WA. 2018-10-14 - 2018-10-16.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2018) PolyBugs – WP2 Genome-Scale Metabolic Modelling. Project meeting ; 2018-01-16 - 2018-01-17.
Poster

Schulz, Christian; Almaas, Eivind. (2018) Using reaction networks to identify cross-organism-wide genes with conserved functions. Summer School Systems and Synthetic Biology ; Sienna. 2018-07-24 - 2018-07-30.
Vitenskapelig foredrag

Schulz, Christian; Almaas, Eivind. (2018) Using reactions networks to identify cross organism-wide genes with conserved functions. NetSci 2018 Conference Paris ; 2018-06-11 - 2018-06-15.
Poster

Schulz, Christian; Almaas, Eivind. (2018) Virtual biological cell engineering: Differences and similarities in genome-scale metabolic models shown for the Pseudomonas case. DigitalLife anual conference ; 2018-03-20 - 2018-03-21.
Poster

Sulheim, Snorre; Degnes, Kristin Fløgstad; Nguyen, Giang-Son; Wentzel, Alexander; Almaas, Eivind. (2018) A network approach to efficient drug discovery. International School and Conference on Network Science . Network Science society; Paris. 2018-06-11 - 2018-06-15.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Sletta, Håvard; Wentzel, Alexander; Almaas, Eivind. (2018) Predicting phenotypes using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Digital Life Conference 2018 . Centre for Digital Life Norway; Bergen. 2018-03-20 - 2018-03-21.
Poster

Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2018) Modelling the metabolic switch S. coelicolor triggered by phosphate depletion. 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018) . Society for Biological Engineering; Seattle. 2018-10-14 - 2018-10-16.
Vitenskapelig foredrag

Voigt, Andre; Almaas, Eivind. (2018) Pyramid scheme or currency? Time-dependent directed modelling of blockchain-based cryptocurrencies. NetSci 2018 ; Paris. 2018-06-15 - 2018-06-15.
Faglig foredrag

Voigt, Andre; Almaas, Eivind. (2018) Using Python for complex network analysis. Elixir Norge All Hands 2018 . Elixir Norge; Drøbak. 2018-10-23 - 2018-10-23.

2017

Vitenskapelig foredrag

Hall, Martina; Almaas, Eivind. (2017) Using network analysis for studying motion variables of infants at high risk of developing cerebral palsy. NORBIS Reseach School Annual Conference . NORBIS; Tromsø. 2017-11-08 - 2017-11-10.
Vitenskapelig foredrag

Karlsen, Emil; Almaas, Eivind. (2017) A method for dynamic flux balance analysis with global constraints. Methodologies for Digital Life - Focus on Metabolic Systems . Senter for Digitalt Liv Norge; Bergen. 2017-10-06 - 2017-10-06.
Poster

Karlsen, Emil; Almaas, Eivind. (2017) Dynamic Flux Balance Analysis with Global Constraints. 3rd annual meeting of NORBIS . NORBIS; Tromsø. 2017-10-08 - 2017-10-10.
Poster

Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology . Chalmers University of Technology; Gøteborg. 2017-06-18 - 2017-06-22.
Vitenskapelig foredrag

Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) . International Society for Systems Biology; Blacksburg, Virgina. 2017-08-06 - 2017-08-12.
Poster

Schulz, Christian; Almaas, Eivind. (2017) Comparison of publicly available Pseudomonas genome scale metabolic models. Norbis anual Conference ; 2017-11-08 - 2017-11-10.
Poster

Sulheim, Snorre; Almaas, Eivind; Kumelj, Tjasa. (2017) A genome-scale metabolic reconstruction of S. coelicolor. NORBIS annual national conference 2017 . NORBIS; Hillesøy, Troms. 2017-11-08 - 2017-11-10.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Methodologies for Digital Life - Focus on Metabolic Systems . Senter for Digitalt Liv Norge; Bergen. 2017-10-06.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology . Chalmers University of Technology; Gøteborg. 2017-06-18 - 2017-06-22.
Vitenskapelig foredrag

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Lunsj-seminar . Institutt for bioteknologi og matvitenskap, NTNU; Trondheim. 2017-09-20 - 2017-09-20.
Vitenskapelig foredrag

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Modelling living systems - From foundational problems to applications . Senter for Digitalt Liv Norge; Bergen. 2017-09-07 - 2017-09-08.
Poster

Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) ; Blacksburg, Virgina. 2017-08-06 - 2017-08-12.
Faglig foredrag

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Synthetic Biology of Natural Products . FUSION conferences; Hotel Fiesta Americana Condesa, Cancun. 2017-03-05 - 2017-03-08.
Faglig foredrag

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. BioProsp 2017, the 8th International Conference on Marine Biotechnology . UiT; UiT, Tromsø. 2017-03-08 - 2017-03-10.
Faglig foredrag

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Centre for Digital Life Norway - Annual conference . Centre for Digital Life Norway; Hotel Bristol, Oslo. 2017-03-20 - 2017-03-21.
Faglig foredrag

Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Meeting with the ReDig project . SINTEF, RG Biotechnology; SINTEF, RG Biotechnology. 2017-09-19 - 2017-09-19.

2016

Poster

Heggeset, Tonje Marita Bjerkan; Lewin, Anna; Nguyen, Giang-Son; Nordborg, Anna; Degnes, Kristin Fløgstad; Sletta, Håvard; Zahlsen, Kolbjørn; Ellingsen, Trond Erling; Bruheim, Per; Almaas, Eivind; Wentzel, Alexander. (2016) INBioPharm - Integrated Novel Natural Product Discovery and Production Platform for Accelerated Biopharmaceutical Innovation from Microbial Biodiversity. Functional Metagenomics 2016 . SINTEF; Jægtvolden Fjordhotell, Inderøy. 2016-09-25 - 2016-09-28.

2014

Vitenskapelig foredrag

Almaas, Eivind. (2014) A story of biological networks. Forskningssamarbeid om EØS-Norge midler ; Riga. 2014-02-25 - 2014-02-25.
Populærvitenskapelig foredrag

Almaas, Eivind. (2014) NTNU iGEM: Syntetisk biologi. Åpen dag 2014 . NTNU; Trondheim. 2014-04-29 - 2014-04-29.
Programdeltagelse

Almaas, Eivind; Lale, Rahmi; Andersen, Maria; Moghaddam, Shiva; Stormo, Ellen; Adl, Patricia; Kjønstad, Ingrid Fadum. (2014) Syntetisk biologi. Schrödingers Katt [TV]. 2014-03-27.

2013

Intervju

Almaas, Eivind. (2013) Hamburger fra laboratoriet. P1 Her og Nå [Radio]. 2013-08-05.
Populærvitenskapelig foredrag

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Næringsforeningen i Trondheim, Trondheim. 2013-09-27 - 2013-09-27.
Populærvitenskapelig foredrag

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Rektors stab, NTNU, Trondheim. 2013-09-26 - 2013-09-26.
Populærvitenskapelig foredrag

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; GK Rør AS, Trondheim. 2013-09-21 - 2013-09-21.
Populærvitenskapelig foredrag

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Atelier Ilsvika, Trondheim. 2013-09-20 - 2013-09-20.
Populærvitenskapelig foredrag

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Trondheim Kommune, Trondheim. 2013-09-19 - 2013-09-19.
Populærvitenskapelig foredrag

Almaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; KIM senteret, Trondheim. 2013-09-18 - 2013-09-18.

2012

Populærvitenskapelig foredrag

Almaas, Eivind. (2012) Bacterial Anti-Cancer Kamikaze explained. European iGEM Jamboree 2012 ; Vrije University, Amsterdam. 2012-10-05 - 2012-10-07.
Intervju

Almaas, Eivind. (2012) Gjør det selv-biologene. A-magasinet [Avis]. 2012-05-25.

2011

Intervju

Almaas, Eivind. (2011) Syntetisk biologi. Teknisk Ukeblad [Avis]. 2011-09-29.

2010

Programdeltagelse

Almaas, Eivind. (2010) Fanget i nettet. Historien om hvordan alt henger sammen. http://www.nrk.no/p2_akademiet/ [Radio]. 2010-04-24.
Populærvitenskapelig foredrag

Almaas, Eivind. (2010) Hva gjør oss smartere?. Foredrag på Universitetet i Stavanger ; Stavanger. 2010-01-21 - 2010-01-21.
Intervju

Almaas, Eivind; Hjorthol, Lars Martin. (2010) Nettverksgener skiller mennesker og sjimpanser. null [Internett]. 2010-02-21.
Intervju

Almaas, Eivind; Olstad, Lisa. (2010) Hvorfor ble vi mennesker?. null [Internett]. 2010-04-10.
Poster

Tripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology ; Edinburgh. 2010-10-10 - 2010-10-16.
Poster

Tripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology ; Trondheim. 2010-09-02 - 2010-09-04.

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Eivind Almaas

Eivind Almaas

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