Eivind Almaas
Foto:
Kai Torgeir Dragland
Om
Interessen min er grunnforskning innen systembiologi, med fokus på studier av komplekse biologiske nettverk, epidemiologisk spredning og cellulær metabolisme. I gruppen min benyttes både datasimuleringer og laboratoriestudier. Vi jobber også med anvendt forskning, spesielt med innen å utvikle alternativ til antibiotika ved laboratorie evolusjon av bakteriofag, og med datasimulering / laboratorie studier av interaksjoner mellom gjær og næringsstoffer / betingelser innen ølbrygging. For mer informasjon, se hjemmesiden til forskergruppen min.
Publikasjoner
2024
-
Hall, Martina;
Skinderhaug, Marit K.;
Almaas, Eivind.
(2024)
Phenome-wide association network demonstrates close connection with individual disease trajectories from the HUNT study.
PLOS ONE
Vitenskapelig artikkel
-
Hall, Martina;
Skogholt, Anne Heidi;
Surakka, Ida;
Dalen, Håvard;
Almaas, Eivind.
(2024)
Genome-wide association studies reveal differences in genetic susceptibility between single events vs. recurrent events of atrial fibrillation and myocardial infarction: the HUNT study.
Frontiers in Cardiovascular Medicine
Vitenskapelig artikkel
-
Ghiaci, Payam;
Jouhten, Paula;
Martyushenko, Nikolay;
Roca-Mesa, Helena;
Vázquez, Jennifer;
Konstantinidis, Dimitrios;
Stenberg, Simon;
Andrejev, Sergej;
Grkovska, Kristina;
Mas, Albert.
(2024)
Highly parallelized laboratory evolution of wine yeasts for enhanced metabolic phenotypes.
Molecular Systems Biology
Vitenskapelig artikkel
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiaci, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert.
(2024)
Correction to: Predictive evolution of metabolic phenotypes using model‐designed environments (Molecular Systems Biology, (2022), 18, 10, (e10980), 10.15252/msb.202210980).
Molecular Systems Biology
Korrigendum
-
Almaas, Eivind;
Hall, Martina.
(2024)
Applied statistical methods and network analysis for identifying similarities and differences in biological data for various traits.
Norges teknisk-naturvitenskapelige universitet
Doktoravhandling
2023
-
Karlsen, Emil;
Gylseth, Marianne Cieslik;
Schulz, Christian;
Almaas, Eivind.
(2023)
A study of a diauxic growth experiment using an expanded dynamic flux balance framework.
PLOS ONE
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Castillo, Sandra;
Jouhten, Paula;
Almaas, Eivind.
(2023)
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts.
BMC Bioinformatics
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2023)
Parameter inference for enzyme and temperature constrained genome-scale models.
Scientific Reports
Vitenskapelig artikkel
-
Fiedler, Alexander Willi;
Gundersen, Madeleine S.;
Vo, Toan Phuc;
Almaas, Eivind;
Vadstein, Olav;
Bakke, Ingrid.
(2023)
Phage therapy minimally affects the water microbiota in an Atlantic salmon (Salmo salar) rearing system while still preventing infection.
Scientific Reports
Vitenskapelig artikkel
2022
-
Simensen, Vetle;
Schulz, Christian;
Karlsen, Emil;
Bråtelund, Signe;
Burgos, Idun Maria Tokvam;
Thorfinnsdottir, Lilja Brekke;
Garcia Calvo, Laura;
Bruheim, Per;
Almaas, Eivind.
(2022)
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling.
PLOS ONE
Vitenskapelig artikkel
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiachi, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert.
(2022)
Predictive evolution of metabolic phenotypes using model-designed environments.
Molecular Systems Biology
Vitenskapelig artikkel
-
Simensen, Vetle;
Seif, Yara;
Almaas, Eivind.
(2022)
Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids.
Frontiers in Molecular Biosciences
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2022)
csdR, an R package for differential co-expression analysis.
BMC Bioinformatics
Vitenskapelig artikkel
-
Voigt, Andre;
Omholt, Stig William;
Almaas, Eivind.
(2022)
Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy.
PLOS ONE
Vitenskapelig artikkel
-
Wolowczyk, Camilla;
Neckmann, Ulrike;
Aure, Miriam Ragle;
Hall, Martina;
Johannessen, Bjarne;
Zhao, Sen;
Skotheim, Rolf I.;
Andersen, Sonja Benedikte;
Zwiggelaar, Rosalie Theda Margien;
Steigedal, Tonje S..
(2022)
NRF2 drives an oxidative stress response predictive of breast cancer.
Free Radical Biology & Medicine
Vitenskapelig artikkel
2021
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0).
BMC Bioinformatics
Korrigendum
-
Pettersen, Jakob Peder;
Gundersen, Madeleine S.;
Almaas, Eivind.
(2021)
Robust bacterial co-occurence community structures are independent of r- and K-selection history.
Scientific Reports
Vitenskapelig artikkel
-
Simensen, Vetle;
Voigt, Andre;
Almaas, Eivind.
(2021)
High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66.
Biotechnology and Bioengineering
Vitenskapelig artikkel
-
Joudeh, Nadeem;
Saragliadis, Athanasios;
Schulz, Christian;
Voigt, Andre;
Almaas, Eivind;
Linke, Dirk.
(2021)
Transcriptomic Response Analysis of Escherichia coli to Palladium Stress.
Frontiers in Microbiology
Vitenskapelig artikkel
-
Ofaim, Shany;
Sulheim, Snorre;
Almaas, Eivind;
Sher, Daniel;
Segrè, Daniel.
(2021)
Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus.
Frontiers in Genetics
Vitenskapelig artikkel
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Containing pandemics through targeted testing of households.
BMC Infectious Diseases
Vitenskapelig artikkel
-
Bernstein, David B.;
Sulheim, Snorre;
Almaas, Eivind;
Segrè, Daniel.
(2021)
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis.
Genome Biology
Vitenskapelig oversiktsartikkel
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.
BMC Bioinformatics
Vitenskapelig artikkel
-
Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology
Vitenskapelig artikkel
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8).
BMC Infectious Diseases
Korrigendum
2020
-
Schulz, Christian;
Almaas, Eivind.
(2020)
Genome-scale reconstructions to assess metabolic phylogeny and organism clustering.
PLOS ONE
Vitenskapelig artikkel
-
Gysi, Deisy Morselli;
Fragoso, Tiago de Miranda;
Zebardast, Fatemeh;
Bertoli, Wesley;
Busskamp, Volker;
Almaas, Eivind;
Nowick, Katja.
(2020)
Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA).
PLOS ONE
Vitenskapelig artikkel
-
Sulheim, Snorre;
Kumelj, Tjasa;
van Dissel, Dino;
Salehzadeh-Yazdi, Ali;
Du, Chao;
Wezel, Gilles P. Van;
Nieselt, Kay;
Almaas, Eivind;
Wentzel, Alexander;
Kerkhoven, Eduard J.
(2020)
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.
iScience
Vitenskapelig artikkel
-
Hall, Martina;
Kültz, Dietmar;
Almaas, Eivind.
(2020)
Identification of key proteins involved in stickleback environmental adaptation with system-level analysis.
Physiological Genomics
Vitenskapelig artikkel
-
Røkke, Gunvor Bjerkelund;
Hohmann-Marriott, Martin Frank;
Almaas, Eivind.
(2020)
An adjustable algal chloroplast plug-and-play
model for genome-scale metabolic models.
PLOS ONE
Vitenskapelig artikkel
2019
-
Neckmann, Ulrike;
Wolowczyk, Camilla;
Hall, Martina;
Almaas, Eivind;
Ren, Jiang;
Zhao, Sen;
Johannessen, Bjarne;
Skotheim, Rolf I.;
Bjørkøy, Geir;
Dijke, Peter Ten.
(2019)
GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients.
Cell Communication and Signaling
Vitenskapelig artikkel
-
Voigt, Andre;
Almaas, Eivind.
(2019)
Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks.
BMC Bioinformatics
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.
Bioinformatics
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
BMC Bioinformatics
Vitenskapelig artikkel
-
Kumelj, Tjasa;
Sulheim, Snorre;
Wentzel, Alexander;
Almaas, Eivind.
(2019)
Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor.
Biotechnology Journal
Vitenskapelig artikkel
2018
-
Gysi, Deisy Morselli;
Voigt, Andre;
Fragoso, Tiago de Miranda;
Almaas, Eivind;
Nowick, Katja.
(2018)
wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
BMC Bioinformatics
Vitenskapelig artikkel
-
Karlsen, Emil;
Schulz, Christian;
Almaas, Eivind.
(2018)
Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
BMC Bioinformatics
Vitenskapelig artikkel
-
Olaisen, Camilla;
Kvitvang, Hans Fredrik Nyvold;
Lee, Sungmin;
Almaas, Eivind;
Bruheim, Per;
Drabløs, Finn;
Otterlei, Marit.
(2018)
The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans.
FEBS Open Bio
Vitenskapelig artikkel
2017
-
Eidsaa, Marius;
Stubbs, Lisa;
Almaas, Eivind.
(2017)
Comparative analysis of weighted gene co-expression networks in human and mouse.
PLOS ONE
Vitenskapelig artikkel
-
Voigt, Andre;
Nowick, Katja;
Almaas, Eivind.
(2017)
A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma.
PLoS Computational Biology
Vitenskapelig artikkel
-
MacGillivray, Michael;
Ko, Amy;
Gruber, Emily;
Sawyer, Miranda;
Almaas, Eivind;
Holder, Allen.
(2017)
Robust analysis of fluxes in genome-scale metabolic pathways.
Scientific Reports
Vitenskapelig artikkel
2016
-
Kültz, Dietmar;
Li, Johnathon;
Paguio, Darlene;
Pham, Tuan;
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Population-specific renal proteomes of marine and freshwater three-spined sticklebacks.
Journal of Proteomics
Vitenskapelig artikkel
-
Cvijovic, Marija;
Höfer, Thomas;
Acimovic, Jure;
Alberghina, Lilia;
Almaas, Eivind;
Besozzi, Daniela;
Blomberg, Anders;
Bretschneider, Till;
Cascante, Marta;
Collin, Olivier.
(2016)
Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.
npj Systems Biology and Applications
Vitenskapelig artikkel
-
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Investigating the relationship between k-core and s-core network decompositions.
Physica A: Statistical Mechanics and its Applications
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Johansen, Sigurd Hagen;
Ghim, Cheol-Min;
Almaas, Eivind.
(2016)
Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability.
BMC Systems Biology
Vitenskapelig artikkel
-
Maleki, Susan;
Almaas, Eivind;
Zotchev, Sergey;
Valla, Svein;
Ertesvåg, Helga.
(2016)
Alginate Biosynthesis Factories in Pseudomonas fluorescens
: Localization and Correlation with Alginate Production Level.
Applied and Environmental Microbiology
Vitenskapelig artikkel
2015
-
Almaas, Eivind;
Brautaset, Trygve.
(2015)
Syntetisk biologi.
Populærvitenskapelig kapittel
-
Ebrahim, Ali;
Almaas, Eivind;
Bauer, Eugen;
Bordbar, Aarash;
Burgard, Anthony P.;
Chang, Roger L.;
Dräger, Andreas;
Famili, Iman;
Feist, Adam M.;
Fleming, Ronan M.T..
(2015)
Do genome-scale models need exact solvers or clearer standards?.
Molecular Systems Biology
Kommentar
-
Drejer, Eivind Bøe;
Almaas, Eivind.
(2015)
Modelling and Analysis of Osmotic Stress in Escherichia Coli.
Norges teknisk-naturvitenskapelige universitet
Masteroppgave
2013
-
Kucharova, Veronika;
Aakvik, Trine;
Almaas, Eivind;
Naas, Adrian Ertsås;
Brautaset, Trygve;
Valla, Svein.
(2013)
Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR.
PLOS ONE
Vitenskapelig artikkel
-
Almaas, Eivind;
Brevik, Iver Håkon.
(2013)
Possible sorting mechanism for microparticles in an evanescent field.
Physical Review A. Atomic, Molecular, and Optical Physics (PRA)
Vitenskapelig artikkel
-
Eidsaa, Marius;
Almaas, Eivind.
(2013)
s-core network decomposition: A generalization of k-core analysis to weighted networks.
Physical Review E. Statistical, Nonlinear, and Soft Matter Physics
Vitenskapelig artikkel
2012
-
Navid, Ali;
Almaas, Eivind.
(2012)
Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach.
BMC Systems Biology
Vitenskapelig artikkel
-
Almaas, Eivind;
Bruheim, Per;
Lale, Rahmi;
Valla, Svein.
(2012)
Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism.
Vitenskapelig kapittel
-
Navid, Ali;
Almaas, Eivind.
(2012)
Yersinia pestis Metabolic Network.
Vitenskapelig kapittel
-
Zavareh, Zahra;
Almaas, Eivind.
(2012)
Complex Network Analysis in Microbial Systems: Theory and Examples.
Vitenskapelig kapittel
2010
-
Almaas, Eivind.
(2010)
Evolution of metabolic networks.
Vitenskapelig kapittel
2009
-
Nowicka, Katja;
Gernata, Tim;
Almaas, Eivind;
Stubbs, Lisa.
(2009)
Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain.
Proceedings of the National Academy of Sciences of the United States of America (PNAS)
Vitenskapelig artikkel
-
Ghim, CM;
Almaas, Eivind.
(2009)
Two-Component Genetic Switch as a Synthetic Module with Tunable Stability.
Physical Review Letters
Vitenskapelig artikkel
Tidsskriftspublikasjoner
-
Navid, Ali;
Almaas, Eivind.
(2012)
Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach.
BMC Systems Biology
Vitenskapelig artikkel
-
Nowicka, Katja;
Gernata, Tim;
Almaas, Eivind;
Stubbs, Lisa.
(2009)
Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain.
Proceedings of the National Academy of Sciences of the United States of America (PNAS)
Vitenskapelig artikkel
-
Kültz, Dietmar;
Li, Johnathon;
Paguio, Darlene;
Pham, Tuan;
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Population-specific renal proteomes of marine and freshwater three-spined sticklebacks.
Journal of Proteomics
Vitenskapelig artikkel
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0).
BMC Bioinformatics
Korrigendum
-
Cvijovic, Marija;
Höfer, Thomas;
Acimovic, Jure;
Alberghina, Lilia;
Almaas, Eivind;
Besozzi, Daniela;
Blomberg, Anders;
Bretschneider, Till;
Cascante, Marta;
Collin, Olivier.
(2016)
Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.
npj Systems Biology and Applications
Vitenskapelig artikkel
-
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Investigating the relationship between k-core and s-core network decompositions.
Physica A: Statistical Mechanics and its Applications
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Johansen, Sigurd Hagen;
Ghim, Cheol-Min;
Almaas, Eivind.
(2016)
Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability.
BMC Systems Biology
Vitenskapelig artikkel
-
Karlsen, Emil;
Gylseth, Marianne Cieslik;
Schulz, Christian;
Almaas, Eivind.
(2023)
A study of a diauxic growth experiment using an expanded dynamic flux balance framework.
PLOS ONE
Vitenskapelig artikkel
-
Eidsaa, Marius;
Stubbs, Lisa;
Almaas, Eivind.
(2017)
Comparative analysis of weighted gene co-expression networks in human and mouse.
PLOS ONE
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Castillo, Sandra;
Jouhten, Paula;
Almaas, Eivind.
(2023)
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts.
BMC Bioinformatics
Vitenskapelig artikkel
-
Schulz, Christian;
Almaas, Eivind.
(2020)
Genome-scale reconstructions to assess metabolic phylogeny and organism clustering.
PLOS ONE
Vitenskapelig artikkel
-
Neckmann, Ulrike;
Wolowczyk, Camilla;
Hall, Martina;
Almaas, Eivind;
Ren, Jiang;
Zhao, Sen;
Johannessen, Bjarne;
Skotheim, Rolf I.;
Bjørkøy, Geir;
Dijke, Peter Ten.
(2019)
GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients.
Cell Communication and Signaling
Vitenskapelig artikkel
-
Kucharova, Veronika;
Aakvik, Trine;
Almaas, Eivind;
Naas, Adrian Ertsås;
Brautaset, Trygve;
Valla, Svein.
(2013)
Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR.
PLOS ONE
Vitenskapelig artikkel
-
Hall, Martina;
Skinderhaug, Marit K.;
Almaas, Eivind.
(2024)
Phenome-wide association network demonstrates close connection with individual disease trajectories from the HUNT study.
PLOS ONE
Vitenskapelig artikkel
-
Ghim, CM;
Almaas, Eivind.
(2009)
Two-Component Genetic Switch as a Synthetic Module with Tunable Stability.
Physical Review Letters
Vitenskapelig artikkel
-
Ebrahim, Ali;
Almaas, Eivind;
Bauer, Eugen;
Bordbar, Aarash;
Burgard, Anthony P.;
Chang, Roger L.;
Dräger, Andreas;
Famili, Iman;
Feist, Adam M.;
Fleming, Ronan M.T..
(2015)
Do genome-scale models need exact solvers or clearer standards?.
Molecular Systems Biology
Kommentar
-
Voigt, Andre;
Nowick, Katja;
Almaas, Eivind.
(2017)
A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma.
PLoS Computational Biology
Vitenskapelig artikkel
-
Simensen, Vetle;
Schulz, Christian;
Karlsen, Emil;
Bråtelund, Signe;
Burgos, Idun Maria Tokvam;
Thorfinnsdottir, Lilja Brekke;
Garcia Calvo, Laura;
Bruheim, Per;
Almaas, Eivind.
(2022)
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling.
PLOS ONE
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Gundersen, Madeleine S.;
Almaas, Eivind.
(2021)
Robust bacterial co-occurence community structures are independent of r- and K-selection history.
Scientific Reports
Vitenskapelig artikkel
-
Hall, Martina;
Skogholt, Anne Heidi;
Surakka, Ida;
Dalen, Håvard;
Almaas, Eivind.
(2024)
Genome-wide association studies reveal differences in genetic susceptibility between single events vs. recurrent events of atrial fibrillation and myocardial infarction: the HUNT study.
Frontiers in Cardiovascular Medicine
Vitenskapelig artikkel
-
Simensen, Vetle;
Voigt, Andre;
Almaas, Eivind.
(2021)
High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66.
Biotechnology and Bioengineering
Vitenskapelig artikkel
-
Gysi, Deisy Morselli;
Fragoso, Tiago de Miranda;
Zebardast, Fatemeh;
Bertoli, Wesley;
Busskamp, Volker;
Almaas, Eivind;
Nowick, Katja.
(2020)
Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA).
PLOS ONE
Vitenskapelig artikkel
-
Sulheim, Snorre;
Kumelj, Tjasa;
van Dissel, Dino;
Salehzadeh-Yazdi, Ali;
Du, Chao;
Wezel, Gilles P. Van;
Nieselt, Kay;
Almaas, Eivind;
Wentzel, Alexander;
Kerkhoven, Eduard J.
(2020)
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.
iScience
Vitenskapelig artikkel
-
Joudeh, Nadeem;
Saragliadis, Athanasios;
Schulz, Christian;
Voigt, Andre;
Almaas, Eivind;
Linke, Dirk.
(2021)
Transcriptomic Response Analysis of Escherichia coli to Palladium Stress.
Frontiers in Microbiology
Vitenskapelig artikkel
-
Maleki, Susan;
Almaas, Eivind;
Zotchev, Sergey;
Valla, Svein;
Ertesvåg, Helga.
(2016)
Alginate Biosynthesis Factories in Pseudomonas fluorescens
: Localization and Correlation with Alginate Production Level.
Applied and Environmental Microbiology
Vitenskapelig artikkel
-
MacGillivray, Michael;
Ko, Amy;
Gruber, Emily;
Sawyer, Miranda;
Almaas, Eivind;
Holder, Allen.
(2017)
Robust analysis of fluxes in genome-scale metabolic pathways.
Scientific Reports
Vitenskapelig artikkel
-
Hall, Martina;
Kültz, Dietmar;
Almaas, Eivind.
(2020)
Identification of key proteins involved in stickleback environmental adaptation with system-level analysis.
Physiological Genomics
Vitenskapelig artikkel
-
Ofaim, Shany;
Sulheim, Snorre;
Almaas, Eivind;
Sher, Daniel;
Segrè, Daniel.
(2021)
Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus.
Frontiers in Genetics
Vitenskapelig artikkel
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Containing pandemics through targeted testing of households.
BMC Infectious Diseases
Vitenskapelig artikkel
-
Bernstein, David B.;
Sulheim, Snorre;
Almaas, Eivind;
Segrè, Daniel.
(2021)
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis.
Genome Biology
Vitenskapelig oversiktsartikkel
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.
BMC Bioinformatics
Vitenskapelig artikkel
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiachi, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert.
(2022)
Predictive evolution of metabolic phenotypes using model-designed environments.
Molecular Systems Biology
Vitenskapelig artikkel
-
Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology
Vitenskapelig artikkel
-
Simensen, Vetle;
Seif, Yara;
Almaas, Eivind.
(2022)
Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids.
Frontiers in Molecular Biosciences
Vitenskapelig artikkel
-
Gysi, Deisy Morselli;
Voigt, Andre;
Fragoso, Tiago de Miranda;
Almaas, Eivind;
Nowick, Katja.
(2018)
wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
BMC Bioinformatics
Vitenskapelig artikkel
-
Karlsen, Emil;
Schulz, Christian;
Almaas, Eivind.
(2018)
Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
BMC Bioinformatics
Vitenskapelig artikkel
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8).
BMC Infectious Diseases
Korrigendum
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2023)
Parameter inference for enzyme and temperature constrained genome-scale models.
Scientific Reports
Vitenskapelig artikkel
-
Fiedler, Alexander Willi;
Gundersen, Madeleine S.;
Vo, Toan Phuc;
Almaas, Eivind;
Vadstein, Olav;
Bakke, Ingrid.
(2023)
Phage therapy minimally affects the water microbiota in an Atlantic salmon (Salmo salar) rearing system while still preventing infection.
Scientific Reports
Vitenskapelig artikkel
-
Ghiaci, Payam;
Jouhten, Paula;
Martyushenko, Nikolay;
Roca-Mesa, Helena;
Vázquez, Jennifer;
Konstantinidis, Dimitrios;
Stenberg, Simon;
Andrejev, Sergej;
Grkovska, Kristina;
Mas, Albert.
(2024)
Highly parallelized laboratory evolution of wine yeasts for enhanced metabolic phenotypes.
Molecular Systems Biology
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2022)
csdR, an R package for differential co-expression analysis.
BMC Bioinformatics
Vitenskapelig artikkel
-
Voigt, Andre;
Omholt, Stig William;
Almaas, Eivind.
(2022)
Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy.
PLOS ONE
Vitenskapelig artikkel
-
Almaas, Eivind;
Brevik, Iver Håkon.
(2013)
Possible sorting mechanism for microparticles in an evanescent field.
Physical Review A. Atomic, Molecular, and Optical Physics (PRA)
Vitenskapelig artikkel
-
Eidsaa, Marius;
Almaas, Eivind.
(2013)
s-core network decomposition: A generalization of k-core analysis to weighted networks.
Physical Review E. Statistical, Nonlinear, and Soft Matter Physics
Vitenskapelig artikkel
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiaci, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert.
(2024)
Correction to: Predictive evolution of metabolic phenotypes using model‐designed environments (Molecular Systems Biology, (2022), 18, 10, (e10980), 10.15252/msb.202210980).
Molecular Systems Biology
Korrigendum
-
Voigt, Andre;
Almaas, Eivind.
(2019)
Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks.
BMC Bioinformatics
Vitenskapelig artikkel
-
Wolowczyk, Camilla;
Neckmann, Ulrike;
Aure, Miriam Ragle;
Hall, Martina;
Johannessen, Bjarne;
Zhao, Sen;
Skotheim, Rolf I.;
Andersen, Sonja Benedikte;
Zwiggelaar, Rosalie Theda Margien;
Steigedal, Tonje S..
(2022)
NRF2 drives an oxidative stress response predictive of breast cancer.
Free Radical Biology & Medicine
Vitenskapelig artikkel
-
Olaisen, Camilla;
Kvitvang, Hans Fredrik Nyvold;
Lee, Sungmin;
Almaas, Eivind;
Bruheim, Per;
Drabløs, Finn;
Otterlei, Marit.
(2018)
The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans.
FEBS Open Bio
Vitenskapelig artikkel
-
Røkke, Gunvor Bjerkelund;
Hohmann-Marriott, Martin Frank;
Almaas, Eivind.
(2020)
An adjustable algal chloroplast plug-and-play
model for genome-scale metabolic models.
PLOS ONE
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.
Bioinformatics
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
BMC Bioinformatics
Vitenskapelig artikkel
-
Kumelj, Tjasa;
Sulheim, Snorre;
Wentzel, Alexander;
Almaas, Eivind.
(2019)
Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor.
Biotechnology Journal
Vitenskapelig artikkel
Del av bok/rapport
-
Almaas, Eivind;
Bruheim, Per;
Lale, Rahmi;
Valla, Svein.
(2012)
Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism.
Vitenskapelig kapittel
-
Almaas, Eivind;
Brautaset, Trygve.
(2015)
Syntetisk biologi.
Populærvitenskapelig kapittel
-
Navid, Ali;
Almaas, Eivind.
(2012)
Yersinia pestis Metabolic Network.
Vitenskapelig kapittel
-
Zavareh, Zahra;
Almaas, Eivind.
(2012)
Complex Network Analysis in Microbial Systems: Theory and Examples.
Vitenskapelig kapittel
-
Almaas, Eivind.
(2010)
Evolution of metabolic networks.
Vitenskapelig kapittel
Studentoppgave eller avhandling
-
Drejer, Eivind Bøe;
Almaas, Eivind.
(2015)
Modelling and Analysis of Osmotic Stress in Escherichia Coli.
Norges teknisk-naturvitenskapelige universitet
Masteroppgave
-
Almaas, Eivind;
Hall, Martina.
(2024)
Applied statistical methods and network analysis for identifying similarities and differences in biological data for various traits.
Norges teknisk-naturvitenskapelige universitet
Doktoravhandling
Undervisning
Formidling
Vaksinering av voksne er ikke nok
Vaksinering av voksne er ikke nok. Skal vi oppnå flokkimmunitet, er det helt nødvendig å vaksinere barn.
Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger
Store husholdninger gir mer smittespredning og bør prioriteres, særlig der smittetrykket er lavt. Det kan gi flokkimmunitet med færre vaksinedoser enn det dagens strategi vil kreve.
Derfor bør norske myndigheter endre sin teststrategi
Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.
Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi
Slik testing fanger opp asymptomatiske og symptomatiske tilfeller tidlig i sykdomsforløpet, og den fjerner behovet for smittesporing.
Korona - åpning av samfunnet
NRK Kveldsnytt, 7.5.2020, Innslag 1
Kan kloakken gi svar på hvor utbredt koronasmitten er i samfunnet?
NRK Dagsrevyen 21, 4.8.2020 @ 5min15sek
Systematisk spytt-testing for covid-19
NRK Dagsrevyen, 22.02.2021 kl. 19, Innslag 8
Bedre koronatesting med fokus på store husstander
Dagsnytt 18 debatt, 2.11.2020
Ny teststrategi mot korona
NRK Dagsnytt 18 debatt, 22.2.2021, Innslag 3
2023
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ForedragAlmaas, Eivind. (2023) Insights from computational modelling of whole-cell metabolism. MISC Workshop
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KonferanseforedragFiedler, Alexander Willi; Gundersen, Madeleine S.; Vo, Toan; Almaas, Eivind; Vadstein, Olav; Bakke, Ingrid. (2023) Phage therapy has little influence on the water microbiota while still preventing infection in Atlantic salmon. 4th International Fish microbiota Workshop
2022
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KonferanseposterPettersen, Jakob Peder; Almaas, Eivind. (2022) What Are Enzyme and Temperature Dependent Genome-Scale Models (etcGEMs) and How Do They Behave?. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022)
-
KonferanseposterSchulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. Cobra conference
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KonferanseposterSchulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. DLN conference
-
KonferanseposterKarlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2022) Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE
2021
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AviskronikkVoigt, Andre; Almaas, Eivind; Omholt, Stig William. (2021) Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger.
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Aviskronikk
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KonferanseforedragAlmaas, Eivind. (2021) How computational models of epidemic spread can inform decision-making dilemmas. The ethics of the Covid-19 pandemic
-
KonferanseforedragKarlsen, Emil; Almaas, Eivind. (2021) Modeling bacteria for production of sustainable bioconcrete. Regular department seminar, IBT NTNU
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KonferanseposterSulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Wezel, Gilles P. Van; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2021) A systems comparison of Streptomyces coelicolor M1152 and M145 reveals major metabolic rewiring. COBRA 2021
2020
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AviskronikkOmholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Derfor bør norske myndigheter endre sin teststrategi.
-
AviskronikkOmholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. (2020) Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2020) Combining Theory and Praxis: Measuring (Microbial) Biomass Composition for Genome-Scale Metabolic Modelling. NBS contact meeting
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2020) First project meeting presentation. BedPan project meeting
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2020) Beer in the NMR - Who left Fingerprints?. NORBIS anual conference
-
KonferanseposterHall, Martina; Skogholt, Anne Heidi; Almaas, Eivind. (2020) Network approach for identifying the most common paths of cardiovascular disease history. NetSci
-
KonferanseforedragAlmaas, Eivind. (2020) Stories of network analysis: Cellular metabolism to COVID-19. What is Life? Lecture series 2020
-
KonferanseposterPettersen, Jakob Peder; Vadstein, Olav; Almaas, Eivind. (2020) What do co-occurence network actually tell us? A case study. NetSci 2020
-
KonferanseforedragSulheim, Snorre; A., Fossheim Fredrik; Almaas, Eivind. (2020) Automatic reconstruction of metabolic pathways from annotated biosynthetic gene clusters. NORBIS annual national conference 2020
2019
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KonferanseposterSulheim, Snorre; Kumelj, Tjasa; Salehzadeh-Yazdi, Ali; Dissel, Dino van; Chao, Du; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2019) An enzyme-constrained genome-scale metabolic model of Streptomyces coelicolor reveals global effects of gene cluster deletion and rpoB mutation. Digital Life Norway Conference 2019
-
KonferanseforedragAlmaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture
-
Konferanseforedrag
-
KonferanseforedragAlmaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture
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KonferanseforedragAlmaas, Eivind. (2019) Computational analysis & prediction of phenotypes.. and some experiments. Guest Lecture
-
KonferanseforedragSimensen, Vetle; Almaas, Eivind. (2019) Reconstruction of a genome-scale metabolic model for the analysis of the oleaginous phenotype of Aurantiochytrium sp. T66. NORBIS annual conference
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KonferanseposterErtesvåg, Helga; Haslene-Hox, Hanne; Aasen, Inga Marie; Almaas, Eivind; Bartosova, Zdenka; Heggeset, Tonje Marita Bjerkan; Le, Simone Balzer; Rau, E-Ming; Stafsnes, Marit Hallvardsdotter; Voigt, Andre. (2019) Industrial microbiology – 'omics methods and modelling as tools for process optimization. DigitalLife 2019
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KonferanseposterSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Fish under stress - Systems biology and mathematical modelling
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KonferanseposterSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Multivariate analysis of omics data with special emphasis on metabolomics Summerschool
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KonferanseforedragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. 2nd Synthetic Biology for Natural Products Conference
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KonferanseforedragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. Functional Metageomics 2019
-
Foredrag
-
Konferanseforedrag
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KonferanseforedragSchulz, Christian; Almaas, Eivind. (2019) Combining Genome-Scale modelling with HUNT. Jebsen Center meeting
-
KonferanseforedragHall, Martina; Almaas, Eivind. (2019) Differential network analysis of subtypes and stages of breast cancer. Det 20. norske statistikermøtet
-
Foredrag
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ForedragVoigt, Andre; Almaas, Eivind. (2019) Online platform for biological network analysis in ELIXIR. NBS Contact Meeting, 2019
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KonferanseposterSimensen, Vetle; Voigt, Andre; Almaas, Eivind. (2019) Genome-scale modeling of Auranthochytrium sp. T66 for increased fatty acid production. Digital Life 2019
-
KonferanseposterKarlsen, Emil; Almaas, Eivind. (2019) Metabolic modeling for microbial production of bio-concrete. NBS Contact Meeting 2019
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KonferanseposterZehner, Jennifer Simone; Karlsen, Emil; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørensen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2019) The quest for bio-concrete: crossing disciplinary boundaries and wrangling bacteria to enable cleaner construction. DigitalLife 2019
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KonferanseforedragSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modelling 3. Bianual project meeting
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KonferanseposterSchulz, Christian; Karlsen, Emil; Kumar, Kanhaiya; Bartosova, Zdenka; Schmid, Jochen; Bruheim, Per; Almaas, Eivind. (2019) Measuring Biomass Composition for Modelling. DLN anual conference
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KonferanseforedragSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modeling: Metabolic engineering to increase production of nylon precursors in Pseudomonas. NBS meeting 2019
2018
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KonferanseforedragAlmaas, Eivind. (2018) Genome-scale metabolic models with uncertainty and global constraints. International Study Group for Systems Biology (ISGSB) Conference 2018
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2018) Genome-Scale metabolic modelling. Bianual PolyBugs project meeting
-
KonferanseposterSchulz, Christian; Almaas, Eivind. (2018) Using reaction networks to identify cross-organism-wide genes with conserved functions. Summer School Systems and Synthetic Biology
-
KonferanseposterSulheim, Snorre; Kumelj, Tjasa; Sletta, Håvard; Wentzel, Alexander; Almaas, Eivind. (2018) Predicting phenotypes using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Digital Life Conference 2018
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KonferanseposterSulheim, Snorre; Degnes, Kristin Fløgstad; Nguyen, Giang-Son; Wentzel, Alexander; Almaas, Eivind. (2018) A network approach to efficient drug discovery. International School and Conference on Network Science
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KonferanseposterSchulz, Christian; Almaas, Eivind. (2018) Genome-scale metabolic reconstructions for phylogeny?. COBRA conference 2018
-
KonferanseforedragKarlsen, Emil; Almaas, Eivind. (2018) In silico evolution of plant-like structures. NetSci 2018 Satellite: Games on Networks
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KonferanseforedragKarlsen, Emil; Almaas, Eivind. (2018) Modeling the developmental physiology of plants. 2nd annual BioCat conference
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KonferanseposterSulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2018) Modelling the metabolic switch S. coelicolor triggered by phosphate depletion. 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018)
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KonferanseforedragAlmaas, Eivind; Karlsen, Emil; Schulz, Christian; Martyushenko, Nikolay. (2018) Dynamic FBA with Global Constraints on Cellular Protein Fraction. 5th Conference on Constraint-Based Reconstruction and Analysis
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KonferanseforedragAlmaas, Eivind. (2018) Differential network analysis as approach to study human disease. Systems Biology for Industrial Biotechnology
-
KonferanseforedragHall, Martina; Almaas, Eivind. (2018) Constructing gene co-expression network using penalized regression. NetSci
-
KonferanseposterHall, Martina; Almaas, Eivind. (2018) Comparison of statistical methods and network analysis for detecting genes related to breast cancer. DLN Annual Conference
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2018) From Zero to Hero: The Story of Modeling Pseudomonas. Department meeting IBT and Food Science
-
ForedragVoigt, Andre; Almaas, Eivind. (2018) Using Python for complex network analysis. Elixir Norge All Hands 2018
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KonferanseforedragSchulz, Christian; Almaas, Eivind. (2018) Discovery of conserved functions within cross-organism-wide genes using reaction networks. BioCat annual conference
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2018) Combining phylogeny with genome-scale metabolic networks: Another tree of life and infinite engineering possibilities?. Micobial Biotechnology Division meeting
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2018) Cross-organism-wide network comparison to identify conserved gene functions. Digital Life Annual PhD School meeting
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2018) Using reactions networks to identify cross organism-wide genes with conserved functions. NetSci 2018 Conference Paris
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2018) Genome-Scale Metabolic Modeling for Biotechnology: What We Need to Conduct Our Magic. Micobial Biotechnology Division meeting
-
KonferanseforedragSchulz, Christian; Almaas, Eivind. (2018) PolyBugs – WP2 Genome-Scale Metabolic Modelling. Project meeting
-
KonferanseforedragVoigt, Andre; Almaas, Eivind. (2018) Pyramid scheme or currency? Time-dependent directed modelling of blockchain-based cryptocurrencies. NetSci 2018
-
KonferanseforedragKarlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automatic assembly of genome-scale metabolic draft reconstructions from KEGG data. NORBIS Annual Conference 2018
-
KonferanseposterKarlsen, Emil; Zehner, Jennifer Simone; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørenssen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2018) Metabolic modelling, reactive transport modelling, and experimental verification of microbial-induced processes in the production of bio-concrete. DigitalLife 2018
-
KonferanseposterSchulz, Christian; Almaas, Eivind. (2018) Virtual biological cell engineering: Differences and similarities in genome-scale metabolic models shown for the Pseudomonas case. DigitalLife anual conference
2017
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KonferanseforedragHall, Martina; Almaas, Eivind. (2017) Using network analysis for studying motion variables of infants at high risk of developing cerebral palsy. NORBIS Reseach School Annual Conference
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KonferanseforedragSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Modelling living systems - From foundational problems to applications
-
KonferanseposterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017)
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ForedragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Synthetic Biology of Natural Products
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ForedragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. BioProsp 2017, the 8th International Conference on Marine Biotechnology
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KonferanseposterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology
-
KonferanseposterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Methodologies for Digital Life - Focus on Metabolic Systems
-
KonferanseforedragSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Lunsj-seminar
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KonferanseposterKumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology
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KonferanseforedragKumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017)
-
KonferanseposterSulheim, Snorre; Almaas, Eivind; Kumelj, Tjasa. (2017) A genome-scale metabolic reconstruction of S. coelicolor. NORBIS annual national conference 2017
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ForedragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Centre for Digital Life Norway - Annual conference
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ForedragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Meeting with the ReDig project
-
KonferanseposterKarlsen, Emil; Almaas, Eivind. (2017) Dynamic Flux Balance Analysis with Global Constraints. 3rd annual meeting of NORBIS
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KonferanseposterSchulz, Christian; Almaas, Eivind. (2017) Comparison of publicly available Pseudomonas genome scale metabolic models. Norbis anual Conference
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KonferanseforedragKarlsen, Emil; Almaas, Eivind. (2017) A method for dynamic flux balance analysis with global constraints. Methodologies for Digital Life - Focus on Metabolic Systems
2016
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KonferanseposterHeggeset, Tonje Marita Bjerkan; Lewin, Anna; Nguyen, Giang-Son; Nordborg, Anna; Degnes, Kristin Fløgstad; Sletta, Håvard; Zahlsen, Kolbjørn; Ellingsen, Trond Erling; Bruheim, Per; Almaas, Eivind. (2016) INBioPharm - Integrated Novel Natural Product Discovery and Production Platform for Accelerated Biopharmaceutical Innovation from Microbial Biodiversity. Functional Metagenomics 2016
2014
-
Konferanseforedrag
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Deltakelse i radio- eller TVAlmaas, Eivind; Lale, Rahmi; Andersen, Maria; Moghaddam, Shiva; Stormo, Ellen; Adl, Patricia; Kjønstad, Ingrid Fadum. (2014) Syntetisk biologi.
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Foredrag
2013
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ForedragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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ForedragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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ForedragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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ForedragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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ForedragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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ForedragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj
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Intervju
2012
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Foredrag
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Intervju
2011
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Intervju
2010
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Intervju
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Intervju
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Intervju
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Foredrag
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Intervju
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KonferanseposterTripathi, Sushil; Thommesen, Liv; Bar, Nadav Skjøndal-; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology
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KonferanseposterTripathi, Sushil; Thommesen, Liv; Bar, Nadav Skjøndal-; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology
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Deltakelse i radio- eller TV