Eivind Almaas
Om
Interessen min er grunnforskning innen systembiologi, med fokus på studier av komplekse biologiske nettverk, epidemiologisk spredning og cellulær metabolisme. I gruppen min benyttes både datasimuleringer og laboratoriestudier. Vi jobber også med anvendt forskning, spesielt med innen å utvikle alternativ til antibiotika ved laboratorie evolusjon av bakteriofag, og med datasimulering / laboratorie studier av interaksjoner mellom gjær og næringsstoffer / betingelser innen ølbrygging. For mer informasjon, se hjemmesiden til forskergruppen min.
Publikasjoner
2023
-
Karlsen, Emil;
Gylseth, Marianne;
Schulz, Christian;
Almaas, Eivind.
(2023)
A study of a diauxic growth experiment using an expanded dynamic flux balance framework.
PLOS ONE.
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2023)
Parameter inference for enzyme and temperature constrained genome-scale models.
Scientific Reports.
volum 13 (1).
Vitenskapelig artikkel
2022
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiachi, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert;
Warringer, Jonas;
Gonzalez, Ramon;
Morales, Pilar;
Patil, Kiran R..
(2022)
Predictive evolution of metabolic phenotypes using model-designed environments.
Molecular Systems Biology.
volum 18 (10).
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2022)
csdR, an R package for differential co-expression analysis.
BMC Bioinformatics.
volum 23.
Vitenskapelig artikkel
-
Simensen, Vetle;
Schulz, Christian;
Karlsen, Emil;
Bråtelund, Signe;
Burgos, Idun Maria Tokvam;
Thorfinnsdottir, Lilja Brekke;
Garcia Calvo, Laura;
Bruheim, Per;
Almaas, Eivind.
(2022)
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling.
PLOS ONE.
volum 17 (1).
Vitenskapelig artikkel
-
Simensen, Vetle;
Seif, Yara;
Almaas, Eivind.
(2022)
Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids.
Frontiers in Molecular Biosciences.
volum 9.
Vitenskapelig artikkel
-
Voigt, Andre;
Omholt, Stig William;
Almaas, Eivind.
(2022)
Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy.
PLOS ONE.
volum 17 (2).
Vitenskapelig artikkel
-
Wolowczyk, Camilla;
Neckmann, Ulrike;
Aure, Miriam Ragle;
Hall, Martina;
Johannessen, Bjarne;
Zhao, Sen;
Skotheim, Rolf I.;
Andersen, Sonja Benedikte;
Zwiggelaar, Rosalie Theda Margien;
Steigedal, Tonje S.;
Lingjærde, Ole Christian;
Sahlberg, Kristine Kleivi;
Almaas, Eivind;
Bjørkøy, Geir.
(2022)
NRF2 drives an oxidative stress response predictive of breast cancer.
Free Radical Biology & Medicine.
volum 184.
Vitenskapelig artikkel
2021
-
Bernstein, David B.;
Sulheim, Snorre;
Almaas, Eivind;
Segrè, Daniel.
(2021)
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis.
Genome Biology.
volum 22.
Vitenskapelig oversiktsartikkel/review
-
Joudeh, Nadeem;
Saragliadis, Athanasios;
Schulz, Christian;
Voigt, Andre;
Almaas, Eivind;
Linke, Dirk.
(2021)
Transcriptomic Response Analysis of Escherichia coli to Palladium Stress.
Frontiers in Microbiology.
volum 12.
Vitenskapelig artikkel
-
Ofaim, Shany;
Sulheim, Snorre;
Almaas, Eivind;
Sher, Daniel;
Segrè, Daniel.
(2021)
Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus.
Frontiers in Genetics.
volum 12.
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Gundersen, Madeleine S.;
Almaas, Eivind.
(2021)
Robust bacterial co-occurence community structures are independent of r- and K-selection history.
Scientific Reports.
volum 11.
Vitenskapelig artikkel
-
Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology.
volum 17 (5).
Vitenskapelig artikkel
-
Simensen, Vetle;
Voigt, Andre;
Almaas, Eivind.
(2021)
High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66.
Biotechnology and Bioengineering.
volum 118.
Vitenskapelig artikkel
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.
BMC Bioinformatics.
volum 22.
Vitenskapelig artikkel
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0).
BMC Bioinformatics.
volum 22 (1).
Errata
-
Voigt, Andre;
Almaas, Eivind.
(2021)
Vaksinering av voksne er ikke nok.
nrk.no/ytring.
Kronikk
-
Voigt, Andre;
Almaas, Eivind;
Omholt, Stig William.
(2021)
Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger.
Dagens næringsliv.
Kronikk
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Containing pandemics through targeted testing of households.
BMC Infectious Diseases.
volum 21.
Vitenskapelig artikkel
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8).
BMC Infectious Diseases.
volum 21 (1).
Errata
2020
-
Gysi, Deisy Morselli;
de Miranda Fragoso, Tiago;
Zebardast, Fatemeh;
Bertoli, Wesley;
Busskamp, Volker;
Almaas, Eivind;
Nowick, Katja.
(2020)
Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA).
PLOS ONE.
volum 15 (10).
Vitenskapelig artikkel
-
Hall, Martina;
Kültz, Dietmar;
Almaas, Eivind.
(2020)
Identification of key proteins involved in stickleback environmental adaptation with system-level analysis.
Physiological Genomics.
volum 52 (11).
Vitenskapelig artikkel
-
Omholt, Stig William;
Almaas, Eivind;
Voigt, Andre;
Hovd, Morten;
Fossen, Thor Inge;
Steinsland, Ingelin.
(2020)
Derfor bør norske myndigheter endre sin teststrategi.
Gemini.
Kronikk
-
Omholt, Stig William;
Almaas, Eivind;
Voigt, Andre;
Hovd, Morten;
Fossen, Thor Inge;
Steinsland, Ingelin.
(2020)
Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.
Aftenposten (morgenutg. : trykt utg.).
Kronikk
-
Røkke, Gunvor Bjerkelund;
Hohmann-Marriott, Martin Frank;
Almaas, Eivind.
(2020)
An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models.
PLOS ONE.
volum 15 (2).
Vitenskapelig artikkel
-
Schulz, Christian;
Almaas, Eivind.
(2020)
Genome-scale reconstructions to assess metabolic phylogeny and organism clustering.
PLOS ONE.
Vitenskapelig artikkel
-
Sulheim, Snorre;
Kumelj, Tjasa;
van Dissel, Dino;
Salehzadeh-Yazdi, Ali;
Du, Chao;
Van Wezel, Gilles P.;
Nieselt, Kay;
Almaas, Eivind;
Wentzel, Alexander;
Kerkhoven, Eduard J.
(2020)
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.
iScience.
volum 23 (9).
Vitenskapelig artikkel
2019
-
Kumelj, Tjasa;
Sulheim, Snorre;
Wentzel, Alexander;
Almaas, Eivind.
(2019)
Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor.
Biotechnology Journal.
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.
Bioinformatics.
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
BMC Bioinformatics.
volum 20.
Vitenskapelig artikkel
-
Neckmann, Ulrike;
Wolowczyk, Camilla;
Hall, Martina;
Almaas, Eivind;
Ren, Jiang;
Zhao, Sen;
Johannessen, Bjarne;
Skotheim, Rolf I.;
Bjørkøy, Geir;
Dijke, Peter Ten;
Holien, Toril.
(2019)
GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients.
Cell Communication and Signaling.
volum 17.
Vitenskapelig artikkel
-
Voigt, Andre;
Almaas, Eivind.
(2019)
Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks.
BMC Bioinformatics.
volum 20 (58).
Vitenskapelig artikkel
2018
-
Gysi, Deisy Morselli;
Voigt, Andre;
Fragoso, Tiago de Miranda;
Almaas, Eivind;
Nowick, Katja.
(2018)
wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
BMC Bioinformatics.
volum 19 (392).
Vitenskapelig artikkel
-
Karlsen, Emil;
Schulz, Christian;
Almaas, Eivind.
(2018)
Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
BMC Bioinformatics.
volum 19 (467).
Vitenskapelig artikkel
-
Olaisen, Camilla;
Kvitvang, Hans Fredrik Nyvold;
Lee, Sungmin;
Almaas, Eivind;
Bruheim, Per;
Drabløs, Finn;
Otterlei, Marit.
(2018)
The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans.
FEBS Open Bio.
volum 8 (7).
Vitenskapelig artikkel
2017
-
Eidsaa, Marius;
Stubbs, Lisa;
Almaas, Eivind.
(2017)
Comparative analysis of weighted gene co-expression networks in human and mouse.
PLOS ONE.
volum 12 (11).
Vitenskapelig artikkel
-
MacGillivray, Michael;
Ko, Amy;
Gruber, Emily;
Sawyer, Miranda;
Almaas, Eivind;
Holder, Allen.
(2017)
Robust analysis of fluxes in genome-scale metabolic pathways.
Scientific Reports.
volum 7 (1).
Vitenskapelig artikkel
-
Voigt, Andre;
Nowick, Katja;
Almaas, Eivind.
(2017)
A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma.
PLoS Computational Biology.
volum 13 (9).
Vitenskapelig artikkel
2016
-
Cvijovic, Marija;
Höfer, Thomas;
Acimovic, Jure;
Alberghina, Lilia;
Almaas, Eivind;
Besozzi, Daniela;
Blomberg, Anders;
Bretschneider, Till;
Cascante, Marta;
Collin, Olivier;
de Atauri, Pedro;
Depner, Cornelia;
Dickinson, Robert;
Dobrzynski, Maciej;
Fleck, Christian;
Garcia-Ojalvo, Jordi;
Gonze, Didier;
Hahn, Jens;
Hess, Heide Marie.
(2016)
Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.
npj Systems Biology and Applications.
volum 2.
Vitenskapelig artikkel
-
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Investigating the relationship between k-core and s-core network decompositions.
Physica A: Statistical Mechanics and its Applications.
volum 449.
Vitenskapelig artikkel
-
Kültz, Dietmar;
Li, Johnathon;
Paguio, Darlene;
Pham, Tuan;
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Population-specific renal proteomes of marine and freshwater three-spined sticklebacks.
Journal of Proteomics.
volum 135.
Vitenskapelig artikkel
-
Maleki, Susan;
Almaas, Eivind;
Zotchev, Sergey;
Valla, Svein;
Ertesvåg, Helga.
(2016)
Alginate Biosynthesis Factories in Pseudomonas fluorescens : Localization and Correlation with Alginate Production Level.
Applied and Environmental Microbiology.
volum 82 (4).
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Johansen, Sigurd Hagen;
Ghim, Cheol-Min;
Almaas, Eivind.
(2016)
Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability.
BMC Systems Biology.
volum 10 (39).
Vitenskapelig artikkel
2015
-
Almaas, Eivind;
Brautaset, Trygve.
(2015)
Syntetisk biologi.
Mendels arv - Genetikkens æra.
publications.POPVIT_KAPITTEL
-
Ebrahim, Ali;
Almaas, Eivind;
Bauer, Eugen;
Bordbar, Aarash;
Burgard, Anthony P.;
Chang, Roger L.;
Dräger, Andreas;
Famili, Iman;
Feist, Adam M.;
Fleming, Ronan M.T.;
Fong, Stephen S.;
Hatzimanikatis, Vassily;
Holder, Allen;
Hucka, Michael;
Hyduke, Daniel;
Jamshidi, Neema;
Lee, Sang Yup;
Le Novère, Nicolas;
Lerman, Joshua A..
(2015)
Do genome-scale models need exact solvers or clearer standards?.
Molecular Systems Biology.
volum 11:831 (10).
Brev til redaktøren
2014
-
Lale, Rahmi;
Drejer, Eivind Bøe;
Hesthammer, Ronja;
Omtvedt, Line;
Lamb, Jacob Joseph;
Røynestad, Pål;
Augestad, Elias;
Marstrander Reehorst, Camilla;
Almaas, Eivind;
Hohmann-Marriott, Martin Frank.
(2014)
Competing in Synthetic biology.
Nettsider (opplysningsmateriale)
-
Lale, Rahmi;
Drejer, Eivind Bøe;
Hesthammer, Ronja;
Omtvedt, Line;
Lamb, Jacob Joseph;
Røynestad, Pål;
Augestad, Elias;
Marstrander Reehorst, Camilla;
Almaas, Eivind;
Hohmann-Marriott, Martin Frank.
(2014)
Only two days away from the competition.
Nettsider (opplysningsmateriale)
-
Lale, Rahmi;
Drejer, Eivind Bøe;
Hesthammer, Ronja;
Omtvedt, Line;
Lamb, Jacob Joseph;
Røynestad, Pål;
Augestad, Elias;
Reehorst, Camilla;
Almaas, Eivind;
Hohmann-Marriott, Martin Frank.
(2014)
We won the gold medal at the iGEM competiton.
Nettsider (opplysningsmateriale)
2013
-
Almaas, Eivind;
Brevik, Iver Håkon.
(2013)
Possible sorting mechanism for microparticles in an evanescent field.
Physical Review A. Atomic, Molecular, and Optical Physics (PRA).
volum 87.
Vitenskapelig artikkel
-
Eidsaa, Marius;
Almaas, Eivind.
(2013)
s-core network decomposition: A generalization of k-core analysis to weighted networks.
Physical Review E. Statistical, Nonlinear, and Soft Matter Physics.
volum 88.
Vitenskapelig artikkel
-
Kucharova, Veronika;
Aakvik, Trine;
Almaas, Eivind;
Naas, Adrian Ertsås;
Brautaset, Trygve;
Valla, Svein.
(2013)
Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR.
PLOS ONE.
volum 8 (6).
Vitenskapelig artikkel
2012
-
Almaas, Eivind;
Bruheim, Per;
Lale, Rahmi;
Valla, Svein.
(2012)
Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism.
Systems Microbiology - Current Topics and Applications.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
-
Navid, Ali;
Almaas, Eivind.
(2012)
Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach.
BMC Systems Biology.
volum 6 (150).
Vitenskapelig artikkel
-
Navid, Ali;
Almaas, Eivind.
(2012)
Yersinia pestis Metabolic Network.
Yersinia : Systems biology and control.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
-
Zavareh, Zahra;
Almaas, Eivind.
(2012)
Complex Network Analysis in Microbial Systems: Theory and Examples.
Microbial Systems Biology: Methods and Protocols.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
2010
-
Almaas, Eivind.
(2010)
Evolution of metabolic networks.
Evolutionary genomics and systems biology.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
-
Almaas, Eivind.
(2010)
Sjimpansens gener - og våre.
Gemini.
publications.INTERVJUSKRIFTL
-
Almaas, Eivind.
(2010)
SÅ lite skiller oss fra sjimpansene.
VG : Verdens gang.
publications.INTERVJUSKRIFTL
2009
-
Ghim, CM;
Almaas, Eivind.
(2009)
Two-Component Genetic Switch as a Synthetic Module with Tunable Stability.
Physical Review Letters.
volum 103 (2).
Vitenskapelig artikkel
-
Nowicka, Katja;
Gernata, Tim;
Almaas, Eivind;
Stubbs, Lisa.
(2009)
Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain.
Proceedings of the National Academy of Sciences of the United States of America.
volum 106 (52).
Vitenskapelig artikkel
Tidsskriftspublikasjoner
-
Karlsen, Emil;
Gylseth, Marianne;
Schulz, Christian;
Almaas, Eivind.
(2023)
A study of a diauxic growth experiment using an expanded dynamic flux balance framework.
PLOS ONE.
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2023)
Parameter inference for enzyme and temperature constrained genome-scale models.
Scientific Reports.
volum 13 (1).
Vitenskapelig artikkel
-
Jouhten, Paula;
Konstantinidis, Dimitrios;
Pereira, Filipa;
Andrejev, Sergej;
Grkovska, Kristina;
Castillo, Sandra;
Ghiachi, Payam;
Beltran, Gemma;
Almaas, Eivind;
Mas, Albert;
Warringer, Jonas;
Gonzalez, Ramon;
Morales, Pilar;
Patil, Kiran R..
(2022)
Predictive evolution of metabolic phenotypes using model-designed environments.
Molecular Systems Biology.
volum 18 (10).
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Almaas, Eivind.
(2022)
csdR, an R package for differential co-expression analysis.
BMC Bioinformatics.
volum 23.
Vitenskapelig artikkel
-
Simensen, Vetle;
Schulz, Christian;
Karlsen, Emil;
Bråtelund, Signe;
Burgos, Idun Maria Tokvam;
Thorfinnsdottir, Lilja Brekke;
Garcia Calvo, Laura;
Bruheim, Per;
Almaas, Eivind.
(2022)
Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling.
PLOS ONE.
volum 17 (1).
Vitenskapelig artikkel
-
Simensen, Vetle;
Seif, Yara;
Almaas, Eivind.
(2022)
Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids.
Frontiers in Molecular Biosciences.
volum 9.
Vitenskapelig artikkel
-
Voigt, Andre;
Omholt, Stig William;
Almaas, Eivind.
(2022)
Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy.
PLOS ONE.
volum 17 (2).
Vitenskapelig artikkel
-
Wolowczyk, Camilla;
Neckmann, Ulrike;
Aure, Miriam Ragle;
Hall, Martina;
Johannessen, Bjarne;
Zhao, Sen;
Skotheim, Rolf I.;
Andersen, Sonja Benedikte;
Zwiggelaar, Rosalie Theda Margien;
Steigedal, Tonje S.;
Lingjærde, Ole Christian;
Sahlberg, Kristine Kleivi;
Almaas, Eivind;
Bjørkøy, Geir.
(2022)
NRF2 drives an oxidative stress response predictive of breast cancer.
Free Radical Biology & Medicine.
volum 184.
Vitenskapelig artikkel
-
Bernstein, David B.;
Sulheim, Snorre;
Almaas, Eivind;
Segrè, Daniel.
(2021)
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis.
Genome Biology.
volum 22.
Vitenskapelig oversiktsartikkel/review
-
Joudeh, Nadeem;
Saragliadis, Athanasios;
Schulz, Christian;
Voigt, Andre;
Almaas, Eivind;
Linke, Dirk.
(2021)
Transcriptomic Response Analysis of Escherichia coli to Palladium Stress.
Frontiers in Microbiology.
volum 12.
Vitenskapelig artikkel
-
Ofaim, Shany;
Sulheim, Snorre;
Almaas, Eivind;
Sher, Daniel;
Segrè, Daniel.
(2021)
Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus.
Frontiers in Genetics.
volum 12.
Vitenskapelig artikkel
-
Pettersen, Jakob Peder;
Gundersen, Madeleine S.;
Almaas, Eivind.
(2021)
Robust bacterial co-occurence community structures are independent of r- and K-selection history.
Scientific Reports.
volum 11.
Vitenskapelig artikkel
-
Schulz, Christian;
Kumelj, Tjasa;
Karlsen, Emil;
Almaas, Eivind.
(2021)
Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition.
PLoS Computational Biology.
volum 17 (5).
Vitenskapelig artikkel
-
Simensen, Vetle;
Voigt, Andre;
Almaas, Eivind.
(2021)
High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66.
Biotechnology and Bioengineering.
volum 118.
Vitenskapelig artikkel
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters.
BMC Bioinformatics.
volum 22.
Vitenskapelig artikkel
-
Sulheim, Snorre;
Fossheim, Fredrik A.;
Wentzel, Alexander;
Almaas, Eivind.
(2021)
Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0).
BMC Bioinformatics.
volum 22 (1).
Errata
-
Voigt, Andre;
Almaas, Eivind.
(2021)
Vaksinering av voksne er ikke nok.
nrk.no/ytring.
Kronikk
-
Voigt, Andre;
Almaas, Eivind;
Omholt, Stig William.
(2021)
Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger.
Dagens næringsliv.
Kronikk
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Containing pandemics through targeted testing of households.
BMC Infectious Diseases.
volum 21.
Vitenskapelig artikkel
-
Voigt, Andre;
Martyushenko, Nikolay;
Karlsen, Emil;
Hall, Martina;
Nyhamar, Kristen;
Omholt, Stig William;
Almaas, Eivind.
(2021)
Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8).
BMC Infectious Diseases.
volum 21 (1).
Errata
-
Gysi, Deisy Morselli;
de Miranda Fragoso, Tiago;
Zebardast, Fatemeh;
Bertoli, Wesley;
Busskamp, Volker;
Almaas, Eivind;
Nowick, Katja.
(2020)
Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA).
PLOS ONE.
volum 15 (10).
Vitenskapelig artikkel
-
Hall, Martina;
Kültz, Dietmar;
Almaas, Eivind.
(2020)
Identification of key proteins involved in stickleback environmental adaptation with system-level analysis.
Physiological Genomics.
volum 52 (11).
Vitenskapelig artikkel
-
Omholt, Stig William;
Almaas, Eivind;
Voigt, Andre;
Hovd, Morten;
Fossen, Thor Inge;
Steinsland, Ingelin.
(2020)
Derfor bør norske myndigheter endre sin teststrategi.
Gemini.
Kronikk
-
Omholt, Stig William;
Almaas, Eivind;
Voigt, Andre;
Hovd, Morten;
Fossen, Thor Inge;
Steinsland, Ingelin.
(2020)
Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.
Aftenposten (morgenutg. : trykt utg.).
Kronikk
-
Røkke, Gunvor Bjerkelund;
Hohmann-Marriott, Martin Frank;
Almaas, Eivind.
(2020)
An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models.
PLOS ONE.
volum 15 (2).
Vitenskapelig artikkel
-
Schulz, Christian;
Almaas, Eivind.
(2020)
Genome-scale reconstructions to assess metabolic phylogeny and organism clustering.
PLOS ONE.
Vitenskapelig artikkel
-
Sulheim, Snorre;
Kumelj, Tjasa;
van Dissel, Dino;
Salehzadeh-Yazdi, Ali;
Du, Chao;
Van Wezel, Gilles P.;
Nieselt, Kay;
Almaas, Eivind;
Wentzel, Alexander;
Kerkhoven, Eduard J.
(2020)
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production.
iScience.
volum 23 (9).
Vitenskapelig artikkel
-
Kumelj, Tjasa;
Sulheim, Snorre;
Wentzel, Alexander;
Almaas, Eivind.
(2019)
Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor.
Biotechnology Journal.
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ErrorTracer: an algorithm for identifying the origins of inconsistencies in genome-scale metabolic models.
Bioinformatics.
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Almaas, Eivind.
(2019)
ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
BMC Bioinformatics.
volum 20.
Vitenskapelig artikkel
-
Neckmann, Ulrike;
Wolowczyk, Camilla;
Hall, Martina;
Almaas, Eivind;
Ren, Jiang;
Zhao, Sen;
Johannessen, Bjarne;
Skotheim, Rolf I.;
Bjørkøy, Geir;
Dijke, Peter Ten;
Holien, Toril.
(2019)
GREM1 is associated with metastasis and predicts poor prognosis in ER-negative breast cancer patients.
Cell Communication and Signaling.
volum 17.
Vitenskapelig artikkel
-
Voigt, Andre;
Almaas, Eivind.
(2019)
Assessment of weighted topological overlap (wTO) to improve fidelity of gene co-expression networks.
BMC Bioinformatics.
volum 20 (58).
Vitenskapelig artikkel
-
Gysi, Deisy Morselli;
Voigt, Andre;
Fragoso, Tiago de Miranda;
Almaas, Eivind;
Nowick, Katja.
(2018)
wTO: An R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
BMC Bioinformatics.
volum 19 (392).
Vitenskapelig artikkel
-
Karlsen, Emil;
Schulz, Christian;
Almaas, Eivind.
(2018)
Automated generation of genome-scale metabolic draft reconstructions based on KEGG.
BMC Bioinformatics.
volum 19 (467).
Vitenskapelig artikkel
-
Olaisen, Camilla;
Kvitvang, Hans Fredrik Nyvold;
Lee, Sungmin;
Almaas, Eivind;
Bruheim, Per;
Drabløs, Finn;
Otterlei, Marit.
(2018)
The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans.
FEBS Open Bio.
volum 8 (7).
Vitenskapelig artikkel
-
Eidsaa, Marius;
Stubbs, Lisa;
Almaas, Eivind.
(2017)
Comparative analysis of weighted gene co-expression networks in human and mouse.
PLOS ONE.
volum 12 (11).
Vitenskapelig artikkel
-
MacGillivray, Michael;
Ko, Amy;
Gruber, Emily;
Sawyer, Miranda;
Almaas, Eivind;
Holder, Allen.
(2017)
Robust analysis of fluxes in genome-scale metabolic pathways.
Scientific Reports.
volum 7 (1).
Vitenskapelig artikkel
-
Voigt, Andre;
Nowick, Katja;
Almaas, Eivind.
(2017)
A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma.
PLoS Computational Biology.
volum 13 (9).
Vitenskapelig artikkel
-
Cvijovic, Marija;
Höfer, Thomas;
Acimovic, Jure;
Alberghina, Lilia;
Almaas, Eivind;
Besozzi, Daniela;
Blomberg, Anders;
Bretschneider, Till;
Cascante, Marta;
Collin, Olivier;
de Atauri, Pedro;
Depner, Cornelia;
Dickinson, Robert;
Dobrzynski, Maciej;
Fleck, Christian;
Garcia-Ojalvo, Jordi;
Gonze, Didier;
Hahn, Jens;
Hess, Heide Marie.
(2016)
Strategies for structuring interdisciplinary education in Systems Biology: an European perspective.
npj Systems Biology and Applications.
volum 2.
Vitenskapelig artikkel
-
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Investigating the relationship between k-core and s-core network decompositions.
Physica A: Statistical Mechanics and its Applications.
volum 449.
Vitenskapelig artikkel
-
Kültz, Dietmar;
Li, Johnathon;
Paguio, Darlene;
Pham, Tuan;
Eidsaa, Marius;
Almaas, Eivind.
(2016)
Population-specific renal proteomes of marine and freshwater three-spined sticklebacks.
Journal of Proteomics.
volum 135.
Vitenskapelig artikkel
-
Maleki, Susan;
Almaas, Eivind;
Zotchev, Sergey;
Valla, Svein;
Ertesvåg, Helga.
(2016)
Alginate Biosynthesis Factories in Pseudomonas fluorescens : Localization and Correlation with Alginate Production Level.
Applied and Environmental Microbiology.
volum 82 (4).
Vitenskapelig artikkel
-
Martyushenko, Nikolay;
Johansen, Sigurd Hagen;
Ghim, Cheol-Min;
Almaas, Eivind.
(2016)
Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability.
BMC Systems Biology.
volum 10 (39).
Vitenskapelig artikkel
-
Ebrahim, Ali;
Almaas, Eivind;
Bauer, Eugen;
Bordbar, Aarash;
Burgard, Anthony P.;
Chang, Roger L.;
Dräger, Andreas;
Famili, Iman;
Feist, Adam M.;
Fleming, Ronan M.T.;
Fong, Stephen S.;
Hatzimanikatis, Vassily;
Holder, Allen;
Hucka, Michael;
Hyduke, Daniel;
Jamshidi, Neema;
Lee, Sang Yup;
Le Novère, Nicolas;
Lerman, Joshua A..
(2015)
Do genome-scale models need exact solvers or clearer standards?.
Molecular Systems Biology.
volum 11:831 (10).
Brev til redaktøren
-
Almaas, Eivind;
Brevik, Iver Håkon.
(2013)
Possible sorting mechanism for microparticles in an evanescent field.
Physical Review A. Atomic, Molecular, and Optical Physics (PRA).
volum 87.
Vitenskapelig artikkel
-
Eidsaa, Marius;
Almaas, Eivind.
(2013)
s-core network decomposition: A generalization of k-core analysis to weighted networks.
Physical Review E. Statistical, Nonlinear, and Soft Matter Physics.
volum 88.
Vitenskapelig artikkel
-
Kucharova, Veronika;
Aakvik, Trine;
Almaas, Eivind;
Naas, Adrian Ertsås;
Brautaset, Trygve;
Valla, Svein.
(2013)
Non-Invasive Analysis of Recombinant mRNA Stability in Escherichia coli by a Combination of Transcriptional Inducer Wash-Out and qRT-PCR.
PLOS ONE.
volum 8 (6).
Vitenskapelig artikkel
-
Navid, Ali;
Almaas, Eivind.
(2012)
Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach.
BMC Systems Biology.
volum 6 (150).
Vitenskapelig artikkel
-
Almaas, Eivind.
(2010)
Sjimpansens gener - og våre.
Gemini.
publications.INTERVJUSKRIFTL
-
Almaas, Eivind.
(2010)
SÅ lite skiller oss fra sjimpansene.
VG : Verdens gang.
publications.INTERVJUSKRIFTL
-
Ghim, CM;
Almaas, Eivind.
(2009)
Two-Component Genetic Switch as a Synthetic Module with Tunable Stability.
Physical Review Letters.
volum 103 (2).
Vitenskapelig artikkel
-
Nowicka, Katja;
Gernata, Tim;
Almaas, Eivind;
Stubbs, Lisa.
(2009)
Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain.
Proceedings of the National Academy of Sciences of the United States of America.
volum 106 (52).
Vitenskapelig artikkel
Del av bok/rapport
-
Almaas, Eivind;
Brautaset, Trygve.
(2015)
Syntetisk biologi.
Mendels arv - Genetikkens æra.
publications.POPVIT_KAPITTEL
-
Almaas, Eivind;
Bruheim, Per;
Lale, Rahmi;
Valla, Svein.
(2012)
Dynamics and robustness of metabolic networks: A systems biology review of Escherichia coli metabolism.
Systems Microbiology - Current Topics and Applications.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
-
Navid, Ali;
Almaas, Eivind.
(2012)
Yersinia pestis Metabolic Network.
Yersinia : Systems biology and control.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
-
Zavareh, Zahra;
Almaas, Eivind.
(2012)
Complex Network Analysis in Microbial Systems: Theory and Examples.
Microbial Systems Biology: Methods and Protocols.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
-
Almaas, Eivind.
(2010)
Evolution of metabolic networks.
Evolutionary genomics and systems biology.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
INFORMASJONSMATR
-
Lale, Rahmi;
Drejer, Eivind Bøe;
Hesthammer, Ronja;
Omtvedt, Line;
Lamb, Jacob Joseph;
Røynestad, Pål;
Augestad, Elias;
Marstrander Reehorst, Camilla;
Almaas, Eivind;
Hohmann-Marriott, Martin Frank.
(2014)
Competing in Synthetic biology.
Nettsider (opplysningsmateriale)
-
Lale, Rahmi;
Drejer, Eivind Bøe;
Hesthammer, Ronja;
Omtvedt, Line;
Lamb, Jacob Joseph;
Røynestad, Pål;
Augestad, Elias;
Marstrander Reehorst, Camilla;
Almaas, Eivind;
Hohmann-Marriott, Martin Frank.
(2014)
Only two days away from the competition.
Nettsider (opplysningsmateriale)
-
Lale, Rahmi;
Drejer, Eivind Bøe;
Hesthammer, Ronja;
Omtvedt, Line;
Lamb, Jacob Joseph;
Røynestad, Pål;
Augestad, Elias;
Reehorst, Camilla;
Almaas, Eivind;
Hohmann-Marriott, Martin Frank.
(2014)
We won the gold medal at the iGEM competiton.
Nettsider (opplysningsmateriale)
Undervisning
Formidling
Vaksinering av voksne er ikke nok
Vaksinering av voksne er ikke nok. Skal vi oppnå flokkimmunitet, er det helt nødvendig å vaksinere barn.
Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger
Store husholdninger gir mer smittespredning og bør prioriteres, særlig der smittetrykket er lavt. Det kan gi flokkimmunitet med færre vaksinedoser enn det dagens strategi vil kreve.
Derfor bør norske myndigheter endre sin teststrategi
Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi.
Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi
Slik testing fanger opp asymptomatiske og symptomatiske tilfeller tidlig i sykdomsforløpet, og den fjerner behovet for smittesporing.
Korona - åpning av samfunnet
NRK Kveldsnytt, 7.5.2020, Innslag 1
Kan kloakken gi svar på hvor utbredt koronasmitten er i samfunnet?
NRK Dagsrevyen 21, 4.8.2020 @ 5min15sek
Systematisk spytt-testing for covid-19
NRK Dagsrevyen, 22.02.2021 kl. 19, Innslag 8
Bedre koronatesting med fokus på store husstander
Dagsnytt 18 debatt, 2.11.2020
Ny teststrategi mot korona
NRK Dagsnytt 18 debatt, 22.2.2021, Innslag 3
2023
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Faglig foredragAlmaas, Eivind. (2023) Insights from computational modelling of whole-cell metabolism. MISC Workshop . MISC exchange program; Oslo. 2023-02-06 - 2023-02-10.
2022
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PosterKarlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. (2022) Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE ; Galway. 2022-09-28 - 2022-09-30.
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PosterPettersen, Jakob Peder; Almaas, Eivind. (2022) What Are Enzyme and Temperature Dependent Genome-Scale Models (etcGEMs) and How Do They Behave?. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) . Society for Biological Engineering; Galway. 2022-09-28 - 2022-09-30.
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PosterSchulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. DLN conference ; Trondheim. 2022-10-20 - 2022-10-21.
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PosterSchulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. (2022) Analyzing the Biomass for an organism. Cobra conference ; Galway. 2022-09-28 - 2022-09-30.
2021
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Vitenskapelig foredragAlmaas, Eivind. (2021) How computational models of epidemic spread can inform decision-making dilemmas. The ethics of the Covid-19 pandemic . Programme for Applied Ethics, NTNU; Online. 2021-06-03 - 2021-06-04.
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Vitenskapelig foredragKarlsen, Emil; Almaas, Eivind. (2021) Modeling bacteria for production of sustainable bioconcrete. Regular department seminar, IBT NTNU . Department of Biotechnology and Food Science (NTNU); NTNU Trondheim. 2021-04-28 - 2021-04-28.
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PosterSulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2021) A systems comparison of Streptomyces coelicolor M1152 and M145 reveals major metabolic rewiring. COBRA 2021 . Aiche; Virtuellt. 2021-03-01 - 2021-03-02.
2020
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Vitenskapelig foredragAlmaas, Eivind. (2020) Stories of network analysis: Cellular metabolism to COVID-19. What is Life? Lecture series 2020 . Karolinska Institutet; Online video presentation. 2020-05-12 - 2020-05-12.
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PosterHall, Martina; Skogholt, Anne Heidi; Almaas, Eivind. (2020) Network approach for identifying the most common paths of cardiovascular disease history. NetSci . The Network Science Society; Online (Rome). 2020-09-21 - 2020-09-25.
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PosterPettersen, Jakob Peder; Vadstein, Olav; Almaas, Eivind. (2020) What do co-occurence network actually tell us? A case study. NetSci 2020 . The Network Science Society; Online. 2020-09-14 - 2020-09-27.
-
Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2020) Beer in the NMR - Who left Fingerprints?. NORBIS anual conference ; 2020-11-03 - 2020-11-03.
-
Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2020) Combining Theory and Praxis: Measuring (Microbial) Biomass Composition for Genome-Scale Metabolic Modelling. NBS contact meeting ; 2020-01-23 - 2020-01-26.
-
Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2020) First project meeting presentation. BedPan project meeting ; 2020-03-04 - 2020-03-05.
-
Vitenskapelig foredragSulheim, Snorre; Fredrik A., Fossheim; Almaas, Eivind. (2020) Automatic reconstruction of metabolic pathways from annotated biosynthetic gene clusters. NORBIS annual national conference 2020 . NORBIS; Trondheim / online. 2020-11-03 - 2020-11-04.
2019
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Vitenskapelig foredragAlmaas, Eivind. (2019) Computational analysis & prediction of phenotypes.. and some experiments. Guest Lecture . Center for Complex Network Research, Northeastern University; Boston. 2019-11-15 - 2019-11-15.
-
Vitenskapelig foredragAlmaas, Eivind. (2019) Genome to phenotypes through computational modeling. Guest Lecture . Prof. Bernhard Palsson; Dept. of Bioengineering, UC San Diego. 2019-09-11 - 2019-09-11.
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Faglig foredragAlmaas, Eivind. (2019) How to go on a sabbatical. IBT's weekly Department lunch . IBT; IBT's lunch room, NV Faculty, NTNU, Gløshaugen. 2019-08-21.
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Vitenskapelig foredragAlmaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture . Dr. Ali Navid; Lawrence Livermore National Laboratory. 2019-09-24 - 2019-09-24.
-
Vitenskapelig foredragAlmaas, Eivind. (2019) On the mapping of genome to phenotypes through computational modeling. Guest Lecture . Prof. Dietmar Kueltz; Dept. of Animal Science, UC Davis. 2019-09-23 - 2019-09-23.
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PosterErtesvåg, Helga; Haslene-Hox, Hanne; Aasen, Inga Marie; Almaas, Eivind; Bartosova, Zdenka; Heggeset, Tonje Marita Bjerkan; Le, Simone Balzer; Rau, E-Ming; Stafsnes, Marit Hallvardsdotter; Voigt, Andre; Bruheim, Per. (2019) Industrial microbiology – 'omics methods and modelling as tools for process optimization. DigitalLife 2019 . Digital Life Norway; Tromsø. 2019-09-05 - 2019-09-06.
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Vitenskapelig foredragHall, Martina; Almaas, Eivind. (2019) Differential network analysis of subtypes and stages of breast cancer. Det 20. norske statistikermøtet . Norsk statistisk forening; Sola. 2019-06-15 - 2019-06-20.
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PosterKarlsen, Emil; Almaas, Eivind. (2019) Metabolic modeling for microbial production of bio-concrete. NBS Contact Meeting 2019 ; 2019-01-24 - 2019-01-27.
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Faglig foredragSchulz, Christian; Almaas, Eivind. (2019) Beer'omics - Kveik for Christmas. IBT department Seminar ; 2019-12-18 - 2019-12-18.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2019) Combining Genome-Scale modelling with HUNT. Jebsen Center meeting ; 2019-10-25 - 2019-10-25.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2019) Genome-Scale modelling - No4. Bianual project meeting ; 2019-10-30 - 2019-10-30.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modeling: Metabolic engineering to increase production of nylon precursors in Pseudomonas. NBS meeting 2019 . NBS; 2019-01-24 - 2019-01-27.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic modelling 3. Bianual project meeting ; 2019-03-11 - 2019-03-11.
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PosterSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Fish under stress - Systems biology and mathematical modelling ; 2019-05-24 - 2019-05-28.
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PosterSchulz, Christian; Almaas, Eivind. (2019) Genome-scale metabolic reconstructions for phylogeny?. Multivariate analysis of omics data with special emphasis on metabolomics Summerschool ; 2019-05-17 - 2019-05-21.
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PosterSchulz, Christian; Karlsen, Emil; Kumar, Kanhaiya; Bartosova, Zdenka; Schmid, Jochen; Bruheim, Per; Almaas, Eivind. (2019) Measuring Biomass Composition for Modelling. DLN anual conference ; 2019-09-05 - 2019-09-06.
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Vitenskapelig foredragSimensen, Vetle; Almaas, Eivind. (2019) Reconstruction of a genome-scale metabolic model for the analysis of the oleaginous phenotype of Aurantiochytrium sp. T66. NORBIS annual conference . NORBIS; Oscarsborg Festning. 2019-09-30 - 2019-10-02.
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PosterSimensen, Vetle; Voigt, Andre; Almaas, Eivind. (2019) Genome-scale modeling of Auranthochytrium sp. T66 for increased fatty acid production. Digital Life 2019 . Digital Life Norway; Tromsø. 2019-09-05 - 2019-09-05.
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PosterSulheim, Snorre; Kumelj, Tjasa; Salehzadeh-Yazdi, Ali; van Dissel, Dino; Chao, Du; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. (2019) An enzyme-constrained genome-scale metabolic model of Streptomyces coelicolor reveals global effects of gene cluster deletion and rpoB mutation. Digital Life Norway Conference 2019 . Digital Life Norway; Tromsø. 2019-09-05 - 2019-09-06.
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Faglig foredragVoigt, Andre; Almaas, Eivind. (2019) Online platform for biological network analysis in ELIXIR. NBS Contact Meeting, 2019 . Norwegian Biochemical Society; Røros. 2019-01-25 - 2019-01-25.
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Vitenskapelig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien S.; Mead, David A.; Medema, Marnix H.; Navarro Munoz, Jorge; Fernandez-Guerra, Antonio; van Dissel, Dino. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. 2nd Synthetic Biology for Natural Products Conference . Fusion Conferences; Puerto Vallarta. 2019-06-02 - 2019-06-05.
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Vitenskapelig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien S.; Mead, David A.; Medema, Marnix H.; Navarro Munoz, Jorge; Fernandez-Guerra, Antonio; van Dissel, Dino. (2019) Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. Functional Metageomics 2019 . SINTEF/NTNU; Trondheim. 2019-06-16 - 2019-09-19.
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PosterZehner, Jennifer Simone; Karlsen, Emil; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-Sørensen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2019) The quest for bio-concrete: crossing disciplinary boundaries and wrangling bacteria to enable cleaner construction. DigitalLife 2019 ; 2019-09-05 - 2019-09-06.
2018
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Vitenskapelig foredragAlmaas, Eivind. (2018) Differential network analysis as approach to study human disease. Systems Biology for Industrial Biotechnology . ERASysAPP workshop combined with the DLN Volterra lecture; Trondheim. 2018-11-09 - 2018-11-09.
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Vitenskapelig foredragAlmaas, Eivind. (2018) Genome-scale metabolic models with uncertainty and global constraints. International Study Group for Systems Biology (ISGSB) Conference 2018 . International Study Group for Systems Biology (ISGSB); Tromsø. 2018-09-24 - 2018-09-28.
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Vitenskapelig foredragAlmaas, Eivind; Karlsen, Emil; Schulz, Christian; Martyushenko, Nikolay. (2018) Dynamic FBA with Global Constraints on Cellular Protein Fraction. 5th Conference on Constraint-Based Reconstruction and Analysis ; Seattle. 2018-10-14 - 2018-10-16.
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PosterHall, Martina; Almaas, Eivind. (2018) Comparison of statistical methods and network analysis for detecting genes related to breast cancer. DLN Annual Conference . DLN; Bergen. 2018-03-20 - 2018-03-21.
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Vitenskapelig foredragHall, Martina; Almaas, Eivind. (2018) Constructing gene co-expression network using penalized regression. NetSci . The Network Science Society; Paris. 2018-06-01 - 2018-06-15.
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Vitenskapelig foredragKarlsen, Emil; Almaas, Eivind. (2018) In silico evolution of plant-like structures. NetSci 2018 Satellite: Games on Networks . The Network Science Society; Paris. 2018-06-11 - 2018-06-15.
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Vitenskapelig foredragKarlsen, Emil; Almaas, Eivind. (2018) Modeling the developmental physiology of plants. 2nd annual BioCat conference . BioCat; Hurdal. 2018-06-04 - 2018-06-06.
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Vitenskapelig foredragKarlsen, Emil; Schulz, Christian; Almaas, Eivind. (2018) Automatic assembly of genome-scale metabolic draft reconstructions from KEGG data. NORBIS Annual Conference 2018 . NORBIS; Voss. 2018-10-17 - 2018-10-19.
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PosterKarlsen, Emil; Zehner, Jennifer Simone; Razbani, Mohammad Amin; Jettestuen, Espen; Malthe-sørenssen, Anders; Wentzel, Alexander; Sikorski, Pawel; Almaas, Eivind; Røyne, Anja. (2018) Metabolic modelling, reactive transport modelling, and experimental verification of microbial-induced processes in the production of bio-concrete. DigitalLife 2018 . Senter for Digitalt Liv Norge; Bergen. 2018-03-20 - 2018-03-21.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2018) Combining phylogeny with genome-scale metabolic networks: Another tree of life and infinite engineering possibilities?. Micobial Biotechnology Division meeting ; 2018-06-22 - 2018-06-22.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2018) Cross-organism-wide network comparison to identify conserved gene functions. Digital Life Annual PhD School meeting ; 2018-05-30 - 2018-06-01.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2018) Discovery of conserved functions within cross-organism-wide genes using reaction networks. BioCat annual conference ; 2018-06-03 - 2018-06-06.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2018) From Zero to Hero: The Story of Modeling Pseudomonas. Department meeting IBT and Food Science ; 2018-05-16 - 2018-05-16.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2018) Genome-Scale Metabolic Modeling for Biotechnology: What We Need to Conduct Our Magic. Micobial Biotechnology Division meeting ; 2018-03-09 - 2018-03-09.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2018) Genome-Scale metabolic modelling. Bianual PolyBugs project meeting ; Trondheim. 2018-08-13 - 2018-08-13.
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PosterSchulz, Christian; Almaas, Eivind. (2018) Genome-scale metabolic reconstructions for phylogeny?. COBRA conference 2018 ; Seattle, WA. 2018-10-14 - 2018-10-16.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2018) PolyBugs – WP2 Genome-Scale Metabolic Modelling. Project meeting ; 2018-01-16 - 2018-01-17.
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PosterSchulz, Christian; Almaas, Eivind. (2018) Using reaction networks to identify cross-organism-wide genes with conserved functions. Summer School Systems and Synthetic Biology ; Sienna. 2018-07-24 - 2018-07-30.
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Vitenskapelig foredragSchulz, Christian; Almaas, Eivind. (2018) Using reactions networks to identify cross organism-wide genes with conserved functions. NetSci 2018 Conference Paris ; 2018-06-11 - 2018-06-15.
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PosterSchulz, Christian; Almaas, Eivind. (2018) Virtual biological cell engineering: Differences and similarities in genome-scale metabolic models shown for the Pseudomonas case. DigitalLife anual conference ; 2018-03-20 - 2018-03-21.
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PosterSulheim, Snorre; Degnes, Kristin Fløgstad; Nguyen, Giang-Son; Wentzel, Alexander; Almaas, Eivind. (2018) A network approach to efficient drug discovery. International School and Conference on Network Science . Network Science society; Paris. 2018-06-11 - 2018-06-15.
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PosterSulheim, Snorre; Kumelj, Tjasa; Sletta, Håvard; Wentzel, Alexander; Almaas, Eivind. (2018) Predicting phenotypes using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Digital Life Conference 2018 . Centre for Digital Life Norway; Bergen. 2018-03-20 - 2018-03-21.
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PosterSulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2018) Modelling the metabolic switch S. coelicolor triggered by phosphate depletion. 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018) . Society for Biological Engineering; Seattle. 2018-10-14 - 2018-10-16.
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Vitenskapelig foredragVoigt, Andre; Almaas, Eivind. (2018) Pyramid scheme or currency? Time-dependent directed modelling of blockchain-based cryptocurrencies. NetSci 2018 ; Paris. 2018-06-15 - 2018-06-15.
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Faglig foredragVoigt, Andre; Almaas, Eivind. (2018) Using Python for complex network analysis. Elixir Norge All Hands 2018 . Elixir Norge; Drøbak. 2018-10-23 - 2018-10-23.
2017
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Vitenskapelig foredragHall, Martina; Almaas, Eivind. (2017) Using network analysis for studying motion variables of infants at high risk of developing cerebral palsy. NORBIS Reseach School Annual Conference . NORBIS; Tromsø. 2017-11-08 - 2017-11-10.
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Vitenskapelig foredragKarlsen, Emil; Almaas, Eivind. (2017) A method for dynamic flux balance analysis with global constraints. Methodologies for Digital Life - Focus on Metabolic Systems . Senter for Digitalt Liv Norge; Bergen. 2017-10-06 - 2017-10-06.
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PosterKarlsen, Emil; Almaas, Eivind. (2017) Dynamic Flux Balance Analysis with Global Constraints. 3rd annual meeting of NORBIS . NORBIS; Tromsø. 2017-10-08 - 2017-10-10.
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PosterKumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology . Chalmers University of Technology; Gøteborg. 2017-06-18 - 2017-06-22.
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Vitenskapelig foredragKumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) . International Society for Systems Biology; Blacksburg, Virgina. 2017-08-06 - 2017-08-12.
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PosterSchulz, Christian; Almaas, Eivind. (2017) Comparison of publicly available Pseudomonas genome scale metabolic models. Norbis anual Conference ; 2017-11-08 - 2017-11-10.
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PosterSulheim, Snorre; Almaas, Eivind; Kumelj, Tjasa. (2017) A genome-scale metabolic reconstruction of S. coelicolor. NORBIS annual national conference 2017 . NORBIS; Hillesøy, Troms. 2017-11-08 - 2017-11-10.
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PosterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Methodologies for Digital Life - Focus on Metabolic Systems . Senter for Digitalt Liv Norge; Bergen. 2017-10-06.
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PosterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology . Chalmers University of Technology; Gøteborg. 2017-06-18 - 2017-06-22.
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Vitenskapelig foredragSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Lunsj-seminar . Institutt for bioteknologi og matvitenskap, NTNU; Trondheim. 2017-09-20 - 2017-09-20.
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Vitenskapelig foredragSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) A genome-scale metabolic model for Streptomyces coelicolor. Modelling living systems - From foundational problems to applications . Senter for Digitalt Liv Norge; Bergen. 2017-09-07 - 2017-09-08.
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PosterSulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind. (2017) Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017) ; Blacksburg, Virgina. 2017-08-06 - 2017-08-12.
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Faglig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Synthetic Biology of Natural Products . FUSION conferences; Hotel Fiesta Americana Condesa, Cancun. 2017-03-05 - 2017-03-08.
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Faglig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. BioProsp 2017, the 8th International Conference on Marine Biotechnology . UiT; UiT, Tromsø. 2017-03-08 - 2017-03-10.
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Faglig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Centre for Digital Life Norway - Annual conference . Centre for Digital Life Norway; Hotel Bristol, Oslo. 2017-03-20 - 2017-03-21.
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Faglig foredragWentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard. (2017) New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Meeting with the ReDig project . SINTEF, RG Biotechnology; SINTEF, RG Biotechnology. 2017-09-19 - 2017-09-19.
2016
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PosterHeggeset, Tonje Marita Bjerkan; Lewin, Anna; Nguyen, Giang-Son; Nordborg, Anna; Degnes, Kristin Fløgstad; Sletta, Håvard; Zahlsen, Kolbjørn; Ellingsen, Trond Erling; Bruheim, Per; Almaas, Eivind; Wentzel, Alexander. (2016) INBioPharm - Integrated Novel Natural Product Discovery and Production Platform for Accelerated Biopharmaceutical Innovation from Microbial Biodiversity. Functional Metagenomics 2016 . SINTEF; Jægtvolden Fjordhotell, Inderøy. 2016-09-25 - 2016-09-28.
2014
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Vitenskapelig foredragAlmaas, Eivind. (2014) A story of biological networks. Forskningssamarbeid om EØS-Norge midler ; Riga. 2014-02-25 - 2014-02-25.
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Populærvitenskapelig foredragAlmaas, Eivind. (2014) NTNU iGEM: Syntetisk biologi. Åpen dag 2014 . NTNU; Trondheim. 2014-04-29 - 2014-04-29.
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ProgramdeltagelseAlmaas, Eivind; Lale, Rahmi; Andersen, Maria; Moghaddam, Shiva; Stormo, Ellen; Adl, Patricia; Kjønstad, Ingrid Fadum. (2014) Syntetisk biologi. Schrödingers Katt [TV]. 2014-03-27.
2013
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IntervjuAlmaas, Eivind. (2013) Hamburger fra laboratoriet. P1 Her og Nå [Radio]. 2013-08-05.
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Populærvitenskapelig foredragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Næringsforeningen i Trondheim, Trondheim. 2013-09-27 - 2013-09-27.
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Populærvitenskapelig foredragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Rektors stab, NTNU, Trondheim. 2013-09-26 - 2013-09-26.
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Populærvitenskapelig foredragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; GK Rør AS, Trondheim. 2013-09-21 - 2013-09-21.
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Populærvitenskapelig foredragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Atelier Ilsvika, Trondheim. 2013-09-20 - 2013-09-20.
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Populærvitenskapelig foredragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; Trondheim Kommune, Trondheim. 2013-09-19 - 2013-09-19.
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Populærvitenskapelig foredragAlmaas, Eivind. (2013) "Nettverk i hverdagen: Fra det opplagte til det overraskende". Forsker til lunsj ; KIM senteret, Trondheim. 2013-09-18 - 2013-09-18.
2012
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Populærvitenskapelig foredragAlmaas, Eivind. (2012) Bacterial Anti-Cancer Kamikaze explained. European iGEM Jamboree 2012 ; Vrije University, Amsterdam. 2012-10-05 - 2012-10-07.
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IntervjuAlmaas, Eivind. (2012) Gjør det selv-biologene. A-magasinet [Avis]. 2012-05-25.
2011
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IntervjuAlmaas, Eivind. (2011) Syntetisk biologi. Teknisk Ukeblad [Avis]. 2011-09-29.
2010
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ProgramdeltagelseAlmaas, Eivind. (2010) Fanget i nettet. Historien om hvordan alt henger sammen. http://www.nrk.no/p2_akademiet/ [Radio]. 2010-04-24.
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Populærvitenskapelig foredragAlmaas, Eivind. (2010) Hva gjør oss smartere?. Foredrag på Universitetet i Stavanger ; Stavanger. 2010-01-21 - 2010-01-21.
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IntervjuAlmaas, Eivind; Hjorthol, Lars Martin. (2010) Nettverksgener skiller mennesker og sjimpanser. null [Internett]. 2010-02-21.
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IntervjuAlmaas, Eivind; Olstad, Lisa. (2010) Hvorfor ble vi mennesker?. null [Internett]. 2010-04-10.
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PosterTripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology ; Edinburgh. 2010-10-10 - 2010-10-16.
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PosterTripathi, Sushil; Thommesen, Liv; Skjøndal-Bar, Nadav; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology ; Trondheim. 2010-09-02 - 2010-09-04.