Konika Chawla
Om
Works at Biocore (Bioinformatics core facility) and part of Bioinformatics and Gene Regulation group. I assists with analysis of different types high throughput data. Such as: Small-RNA sequencing, RNAseq, Microarray data, Bacterial whole genome sequencing data etc.
Publikasjoner
2021
-
Hegre, Siv Anita;
Samdal, Helle;
Klima, Antonin;
Stovner, Endre Bakken;
Nørsett, Kristin Gabestad;
Liabakk, Nina-Beate;
Olsen, Lene Christin;
Chawla, Konika;
Aas, Per Arne;
Sætrom, Pål.
(2021)
Joint changes in RNA, RNA polymerase II, and promoter activity through the cell cycle identify non-coding RNAs involved in proliferation.
Scientific Reports.
volum 11:18952.
Vitenskapelig artikkel
-
Solvin, Åshild Øksnevad;
Chawla, Konika;
Olsen, Lene Christin;
Hegre, Siv Anita;
Danielsen, Kjersti;
Jenssen, Marita;
Furberg, Anne-Sofie;
Saunes, Marit;
Hveem, Kristian;
Sætrom, Pål;
Løset, Mari.
(2021)
MicroRNA profiling of psoriatic skin identifies 11 miRNAs associated with disease severity.
Experimental Dermatology.
volum 31 (4).
Vitenskapelig artikkel
-
Tingö, Lina;
Ahlberg, Emelie;
Johansson, Lovisa;
Pedersen, Sindre Andre;
Chawla, Konika;
Sætrom, Pål;
Cione, Erika;
Simpson, Melanie Rae.
(2021)
Non-coding RNAs in human breast milk: A systematic review.
Frontiers in Immunology.
volum 12:725323.
Vitenskapelig oversiktsartikkel/review
2019
-
Mjelle, Robin;
Dima, Simona O;
Bacalbasa, Nicolae;
Chawla, Konika;
Sorop, Andrei;
Cucu, Dana;
Herlea, Vlad;
Sætrom, Pål;
Popescu, Irinel.
(2019)
Comprehensive transcriptomic analyses of tissue, serum, and serum exosomes from hepatocellular carcinoma patients.
BMC Cancer.
volum 19 (1).
Vitenskapelig artikkel
-
Solvin, Åshild Øksnevad;
Chawla, Konika;
Olsen, Lene Christin;
Danielsen, Kjersti;
Jenssen, Marita;
Furberg, Anne-Sofie;
Saunes, Marit;
Hveem, Kristian;
Sætrom, Pål;
Løset, Mari.
(2019)
Combined mRNA and miRNA Analysis of Psoriatic Skin.
Forum for Nordic Dermato-Venereology.
volum 24 (2).
Sammendrag/abstract
2018
-
Toraskar, Jimita Prashant;
Magnussen, Synnøve;
Chawla, Konika;
Svineng, Gunbjørg;
Steigedal, Tonje S..
(2018)
Nephronectin mediates p38 MAPK‐induced cell viability via its integrin binding enhancer motif.
FEBS Open Bio.
volum 8 (12).
Vitenskapelig artikkel
2017
-
Chawla, Konika;
Kuiper, Martin.
(2017)
Discovering, analysing and taking care of knowledge.
2017. ISBN 978-82-326-2316-7.
Doktorgradsavhandling
2016
-
Chawla, Konika;
Kuiper, Martin.
(2016)
Genes2GO: A web application for querying gene sets for specific GO terms.
Bioinformation.
volum 12 (3).
Vitenskapelig artikkel
-
Tripathi, Sushil;
Vercruysse, Steven;
Chawla, Konika;
Christie, Karen R.;
Blake, Judith A;
Huntley, Rachael P.;
Orchard, Sandra;
Hermjakob, Henning;
Thommesen, Liv;
Lægreid, Astrid;
Kuiper, Martin.
(2016)
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
Database: The Journal of Biological Databases and Curation.
Vitenskapelig artikkel
2015
-
Tripathi, Sushil;
Flobak, Åsmund;
Chawla, Konika;
Baudot, Anaïs;
Bruland, Torunn;
Thommesen, Liv;
Kuiper, Martin Tremen R.;
Lægreid, Astrid.
(2015)
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
BMC Systems Biology.
volum 9 (40).
Vitenskapelig artikkel
2013
-
Chawla, Konika;
Tripathi, Sushil;
Thommesen, Liv;
Lægreid, Astrid;
Kuiper, Martin.
(2013)
TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.
Bioinformatics.
volum 29 (19).
Vitenskapelig artikkel
2011
-
Chawla, Konika;
Barah, Pankaj;
Kuiper, Martin;
Bones, Atle M..
(2011)
Systems Biology: a Promising Tool to Study Abiotic Stress Responses.
Omics and Plant Abiotic Stress Tolerance.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
Tidsskriftspublikasjoner
-
Hegre, Siv Anita;
Samdal, Helle;
Klima, Antonin;
Stovner, Endre Bakken;
Nørsett, Kristin Gabestad;
Liabakk, Nina-Beate;
Olsen, Lene Christin;
Chawla, Konika;
Aas, Per Arne;
Sætrom, Pål.
(2021)
Joint changes in RNA, RNA polymerase II, and promoter activity through the cell cycle identify non-coding RNAs involved in proliferation.
Scientific Reports.
volum 11:18952.
Vitenskapelig artikkel
-
Solvin, Åshild Øksnevad;
Chawla, Konika;
Olsen, Lene Christin;
Hegre, Siv Anita;
Danielsen, Kjersti;
Jenssen, Marita;
Furberg, Anne-Sofie;
Saunes, Marit;
Hveem, Kristian;
Sætrom, Pål;
Løset, Mari.
(2021)
MicroRNA profiling of psoriatic skin identifies 11 miRNAs associated with disease severity.
Experimental Dermatology.
volum 31 (4).
Vitenskapelig artikkel
-
Tingö, Lina;
Ahlberg, Emelie;
Johansson, Lovisa;
Pedersen, Sindre Andre;
Chawla, Konika;
Sætrom, Pål;
Cione, Erika;
Simpson, Melanie Rae.
(2021)
Non-coding RNAs in human breast milk: A systematic review.
Frontiers in Immunology.
volum 12:725323.
Vitenskapelig oversiktsartikkel/review
-
Mjelle, Robin;
Dima, Simona O;
Bacalbasa, Nicolae;
Chawla, Konika;
Sorop, Andrei;
Cucu, Dana;
Herlea, Vlad;
Sætrom, Pål;
Popescu, Irinel.
(2019)
Comprehensive transcriptomic analyses of tissue, serum, and serum exosomes from hepatocellular carcinoma patients.
BMC Cancer.
volum 19 (1).
Vitenskapelig artikkel
-
Solvin, Åshild Øksnevad;
Chawla, Konika;
Olsen, Lene Christin;
Danielsen, Kjersti;
Jenssen, Marita;
Furberg, Anne-Sofie;
Saunes, Marit;
Hveem, Kristian;
Sætrom, Pål;
Løset, Mari.
(2019)
Combined mRNA and miRNA Analysis of Psoriatic Skin.
Forum for Nordic Dermato-Venereology.
volum 24 (2).
Sammendrag/abstract
-
Toraskar, Jimita Prashant;
Magnussen, Synnøve;
Chawla, Konika;
Svineng, Gunbjørg;
Steigedal, Tonje S..
(2018)
Nephronectin mediates p38 MAPK‐induced cell viability via its integrin binding enhancer motif.
FEBS Open Bio.
volum 8 (12).
Vitenskapelig artikkel
-
Chawla, Konika;
Kuiper, Martin.
(2016)
Genes2GO: A web application for querying gene sets for specific GO terms.
Bioinformation.
volum 12 (3).
Vitenskapelig artikkel
-
Tripathi, Sushil;
Vercruysse, Steven;
Chawla, Konika;
Christie, Karen R.;
Blake, Judith A;
Huntley, Rachael P.;
Orchard, Sandra;
Hermjakob, Henning;
Thommesen, Liv;
Lægreid, Astrid;
Kuiper, Martin.
(2016)
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
Database: The Journal of Biological Databases and Curation.
Vitenskapelig artikkel
-
Tripathi, Sushil;
Flobak, Åsmund;
Chawla, Konika;
Baudot, Anaïs;
Bruland, Torunn;
Thommesen, Liv;
Kuiper, Martin Tremen R.;
Lægreid, Astrid.
(2015)
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
BMC Systems Biology.
volum 9 (40).
Vitenskapelig artikkel
-
Chawla, Konika;
Tripathi, Sushil;
Thommesen, Liv;
Lægreid, Astrid;
Kuiper, Martin.
(2013)
TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.
Bioinformatics.
volum 29 (19).
Vitenskapelig artikkel
Del av bok/rapport
-
Chawla, Konika;
Barah, Pankaj;
Kuiper, Martin;
Bones, Atle M..
(2011)
Systems Biology: a Promising Tool to Study Abiotic Stress Responses.
Omics and Plant Abiotic Stress Tolerance.
Vitenskapelig Kapittel/Artikkel/Konferanseartikkel
Rapport
-
Chawla, Konika;
Kuiper, Martin.
(2017)
Discovering, analysing and taking care of knowledge.
2017. ISBN 978-82-326-2316-7.
Doktorgradsavhandling
Formidling
2017
-
PosterWohlwend, Martin Rainer; Chawla, Konika; Wisløff, Ulrik; Moreira, Jose Bianco Nascimento. (2017) Exercise regulates expression of long noncoding RNAs. 15th Annual CHFR Symposium on Heart Failure ; 2017-09-20 - 2017-09-22.
2016
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PosterJohansen, Jostein; Chawla, Konika; Olsen, Lene Christin; Sætrom, Pål. (2016) Bioinformatics Core Facility. Seminar for staff at the future Faculty of Medicine and Health Sciences . NTNU; Trondheim. 2016-11-10 - 2016-11-11.
2014
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Faglig foredragDe Mulder, Wim; Zavareh, Zahra; Chawla, Konika; Kuiper, Martin. (2014) Experimental Verification of the Quality of Clusterings Produced by Hard Clustering Algorithms After the Removal of Unstable Data Elements. BIOTECHNO 2014, DBKDA 2014 . International Academy, Research and Industry Association; Chamonix. 2014-04-20 - 2014-04-24.
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PosterSanabria, Adriana Maria; Chawla, Konika; Drabløs, Finn; Steigedal, Magnus; Mæland, Johan A.; Afset, Jan Egil. (2014) An attempt to elucidate the genes encoding R3,Z1 and Z2 surface exposed proteins from two streptococcus agalactiae strains from Zimbabwe. 2014 XIX Lancefield International Symposium on Streptococci and Streptococcal Diseases . SADEBAC, aam(asociacion argentina de microbiologia); Buenos Aires. 2014-11-09 - 2014-11-12.
2011
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PosterTripathi, Sushil; Venkatesan, Aravind; Egaña, Mikel; Zavareh, Zahra; Chawla, Konika; Mironov, Vladimir; Thommesen, Liv; Bruland, Torunn; Kuiper, Martin; Lægreid, Astrid. (2011) Automated Assessment of High Throughput Hypotheses on Gene Regulatory Mechanisms Involved in the Gastrin Response. Bio-Ontologies 2011 . ISMB 2011; Vienna. 2011-07-15 - 2011-07-16.