Astrid Lægreid
Om
Interesser
Systembiologi og bruken av denne i nye biomedisinske tilnærmingar.
Kunnskapsalmenningen som grunnlag for systembiologi.
Fleirfagleg forsking som - gjennom å famne humaniora, naturvitskap og teknologi, aukar forskinga sin kvalitet og relevans
Forskingsprosjekt
Leiar: "Rational development of anti-cancer drug combinations"
Partnar: "Crossover Research" og "COLOSYS"
Bakgrunn
Lægreid studerte biokjemi, matematikk og musikkvitskap undervegs til master (1982) og PhD (1985) i biokjemi ved Universitetet i Oslo. I postdoktorperioden etablerte Lægreid seg innanfor molekylærbiologisk forsking som ho tok i bruk til kreftforsking. Lægreid spela ein sentral rolle i oppretting av det nasjonale Funksjonell Genomforskings-programmet FUGE, der ho også leia NTNU sin mikromatrise-kjernefasilitet som ein av nodane i det nasjonale konsortiet for mikromatrise-teknologi. Lægreid har arbeidd med epistemiske og sosio-etiske problemstillingar som ledd i å utvikle eiga kreftforsking frå tradisjonell molekylær cellebiologi til systembiologiske tilnærmingar.
Noverande stilling: Professor i funksjonell genomforsking, Institutt for kreftforsking og molekylær medisin, NTNU; Tidlegare universitets-leiarstillingar: Prodekan forsking ved Medisinsk fakultet, NTNU, 1996-1999; Prorektor forsking og nyskaping, NTNU, 2005-2009.
Publikasjoner
2023
-
Acencio, Marcio Luis;
Vázquez, Miguel;
Chawla, Konika;
Lægreid, Astrid Renner;
Kuiper, Martin.
(2023)
TFCheckpoint database update, a cross-referencing system for transcription factors from human, mouse and rat.
Nucleic Acids Research (NAR)
Vitenskapelig artikkel
-
Müller-Dott, Sophia;
Tsirvouli, Eirini;
Vazquez, Miguel;
Flores, Ricardo O Ramirez;
Badia-I-Mompel, Pau;
Fallegger, Robin;
Türei, Dénes;
Lægreid, Astrid Renner;
Saez-Rodriguez, Julio.
(2023)
Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities.
Nucleic Acids Research (NAR)
Vitenskapelig artikkel
-
Heck, Kathleen;
Lindholm, Håvard Takle;
Niederdorfer, Barbara;
Tsirvouli, Eirini;
Kuiper, Martin;
Flobak, Åsmund;
Lægreid, Astrid Renner;
Thommesen, Liv.
(2023)
Characterisation of Colorectal Cancer Cell Lines through Proteomic Profiling of Their Extracellular Vesicles.
Proteomes
Vitenskapelig artikkel
2022
-
Vazquez Garcia, Miguel;
Krallinger, Martin;
Leitner, Florian;
Kuiper, Martin;
Valencia, Alfonso;
Lægreid, Astrid.
(2022)
ExTRI: Extraction of transcription regulation interactions from literature.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Vitenskapelig artikkel
-
Kuiper, Martin;
Bonello, Joseph;
Fernández-Breis, Jesualdo Tomás;
Bucher, Philipp;
Futschik, Matthias E;
Gaudet, Pascale;
Kulakovskiy, Ivan V.;
Licata, Luana;
Logie, Colin;
Lovering, Ruth C..
(2022)
The gene regulation knowledge commons: the action area of GREEKC.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Vitenskapelig artikkel
2021
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Cortés, Belén Juanes;
Vera-Ramos, José Antonio;
Lovering, Ruth C.;
Gaudet, Pascale;
Lægreid, Astrid;
Logie, Colin;
Schulz, Stefan;
Roldán-García, María del Mar;
Kuiper, Martin;
Fernández-Breis, Jesualdo Tomás.
(2021)
Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Vitenskapelig artikkel
-
Carbon, Seth J.;
Douglass, Eric;
Good, Benjamin M;
Unni, Deepak R;
Harris, Nomi L.;
Mungall, Christopher J.;
Basu, Siddartha;
Chisholm, Rex L.;
Dodson, Robert J.;
Hartline, Eric.
(2021)
The Gene Ontology resource: enriching a GOld mine.
Nucleic Acids Research (NAR)
Vitenskapelig artikkel
-
Lovering, Ruth C.;
Gaudet, Pascale;
Acencio, Marcio Luis;
Ignatchenko, Alex;
Jolma, Arttu;
Fornes, Oriol;
Kuiper, Martin;
Kulakovskiy, Ivan V.;
Lægreid, Astrid;
Martin, Maria J..
(2021)
A GO catalogue of human DNA-binding transcription factors.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Vitenskapelig artikkel
-
Gaudet, Pascale;
Logie, Colin;
Lovering, Ruth C.;
Kuiper, Martin;
Lægreid, Astrid;
Thomas, Paul D..
(2021)
Gene Ontology representation for transcription factor functions.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Vitenskapelig artikkel
2020
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Niederdorfer, Barbara;
Touré, Vasundra;
Vazques, Miguel;
Thommesen, Liv;
Kuiper, Martin Tremen R.;
Lægreid, Astrid;
Flobak, Åsmund.
(2020)
Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction.
Frontiers in Physiology
Vitenskapelig artikkel
-
Folkesson, Evelina;
Niederdorfer, Barbara;
To, Vu;
Thommesen, Liv;
Klinkenberg, Geir;
Lægreid, Astrid;
Flobak, Åsmund.
(2020)
High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids.
Scientific Reports
Vitenskapelig artikkel
-
Nydal, Rune;
Bennett, Gaymon;
Kuiper, Martin;
Lægreid, Astrid.
(2020)
Silencing trust: confidence and familiarity in re-engineering knowledge infrastructures.
Medicine, Health care and Philosophy
Vitenskapelig artikkel
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Folkesson, Evelina;
Niederdorfer, Barbara;
Nakstad, Vu To;
Thommesen, Liv;
Klinkenberg, Geir;
Lægreid, Astrid;
Flobak, Åsmund.
(2020)
Author Correction: High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids (Scientific Reports, (2020), 10, 1, (11574), 10.1038/s41598-020-68441-0).
Scientific Reports
Korrigendum
-
Touré, Vasundra;
Vercruysse, Steven;
Acencio, Marcio Luis;
Lovering, Ruth C.;
Orchard, Sandra;
Bradley, Glyn;
Casals-Casas, Cristina;
Chaouiya, Claudine;
del-Toro, Noemi;
Flobak, Åsmund.
(2020)
The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST).
Bioinformatics
Vitenskapelig artikkel
2019
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Carbon, Seth J.;
Douglass, E;
Dunn, N;
Good, B;
Harris, NL;
Lewis, SE;
Mungall, CJ;
Basu, S;
Chisholm, RL;
Dodson, RJ.
(2019)
The Gene Ontology Resource: 20 years and still GOing strong.
Nucleic Acids Research (NAR)
Vitenskapelig artikkel
-
Perfetto, Livia;
Acencio, Marcio Luis;
Bradley, Glyn;
Cesareni, Gianni;
Toro, Noemi del;
Fazekas, David;
Hermjakob, Henning;
Korcsmaros, Tamas;
Kuiper, Martin;
Lægreid, Astrid.
(2019)
CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination.
Bioinformatics
Vitenskapelig artikkel
-
Flobak, Åsmund;
Niederdorfer, Barbara;
To, Vu;
Thommesen, Liv;
Klinkenberg, Geir;
Lægreid, Astrid.
(2019)
A high-throughput drug combination screen of targeted small molecule inhibitors in cancer cell lines.
Scientific Data
Vitenskapelig artikkel
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Efstathiou, Sophia;
Nydal, Rune;
Lægreid, Astrid;
Kuiper, Martin.
(2019)
Scientific knowledge in the age of computation: Explicated, computable and manageable?.
Theoria. An international Journal of Theory, History and Foundations of Science
Vitenskapelig artikkel
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Vera-Ramos, Jose Antonio;
Juanes-Cortes, Belen;
Fernández-Breis, Jesualdo Tomás;
Gaudet, Pascale;
Kuiper, Martin;
Lægreid, Astrid;
Logie, Colin;
Roldan-Garcia, Maria del Mar;
Schulz, Stefan.
(2019)
An example of multimodal biological knowledge representation.
CEUR Workshop Proceedings
Vitenskapelig artikkel
-
Menden, Michael Patrick;
Wang, Dennis;
Mason, Mike J.;
Szalai, Bence;
Bulusu, Krishna C.;
Guan, Yuanfang;
Flobak, Åsmund;
Kuiper, Martin;
Lægreid, Astrid;
Thommesen, Liv.
(2019)
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Nature Communications
Vitenskapelig artikkel
2017
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Flobak, Åsmund;
Vazquez Garcia, Miguel;
Lægreid, Astrid;
Valencia, Alfonso.
(2017)
CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets.
Bioinformatics
Vitenskapelig artikkel
2016
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Tripathi, Sushil;
Vercruysse, Steven;
Chawla, Konika;
Christie, Karen R.;
Blake, Judith A;
Huntley, Rachael P.;
Orchard, Sandra;
Hermjakob, Henning;
Thommesen, Liv;
Lægreid, Astrid.
(2016)
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
Database: The Journal of Biological Databases and Curation
Vitenskapelig artikkel
2015
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Flobak, Åsmund;
Baudot, Anaïs;
Remy, Elisabeth;
Thommesen, Liv;
Thieffry, Denis;
Kuiper, Martin;
Lægreid, Astrid.
(2015)
Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.
PLoS Computational Biology
Vitenskapelig artikkel
-
Tripathi, Sushil;
Flobak, Åsmund;
Chawla, Konika;
Baudot, Anaïs;
Bruland, Torunn;
Thommesen, Liv;
Kuiper, Martin Tremen R.;
Lægreid, Astrid.
(2015)
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
BMC Systems Biology
Vitenskapelig artikkel
2014
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Orchard, Sandra;
Ammari, M;
Aranda, B;
Breuza, L;
Briganti, L;
Broackes-Carter, F;
Campbell, NH;
Chavali, G;
Chen, C;
Del-Toro, N.
(2014)
The MIntAct project - IntAct as a common curation platform for 11 molecular interaction databases.
Nucleic Acids Research (NAR)
Vitenskapelig artikkel
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Selvik, Linn-Karina M.;
Rao, Shalini;
Steigedal, Tonje;
Haltbakk, Ildri;
Misund, Kristine;
Bruland, Torunn;
Prestvik, Wenche S;
Lægreid, Astrid;
Thommesen, Liv.
(2014)
Salt-inducible kinase 1 (SIK1) is induced by gastrin and inhibits migration of gastric adenocarcinoma cells.
PLOS ONE
Vitenskapelig artikkel
-
Venkatesan, Aravind;
Tripathi, Sushil;
Galdeano, Alejandro Sanz de;
Blondé, Ward;
Lægreid, Astrid;
Mironov, Vladimir;
Kuiper, Martin.
(2014)
Finding gene regulatory network candidates using the gene expression knowledge base.
BMC Bioinformatics
Vitenskapelig artikkel
2013
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Feuerherm, Astrid Jullumstrø;
Jørgensen, Katarina Mariann;
Sommerfelt, Randi Magnus;
Eidem, Live Egeland;
Lægreid, Astrid;
Johansen, Berit.
(2013)
Platelet-activating factor induces proliferation in differentiated keratinocytes.
Molecular and Cellular Biochemistry
Vitenskapelig artikkel
-
Selvik, Linn-Karina M.;
Fjeldbo, Christina Sæten;
Flatberg, Arnar;
Steigedal, Tonje;
Misund, Kristine;
Anderssen, Endre;
Doseth, Berit;
Langaas, Mette;
Tripathi, Sushil;
Beisvag, Vidar.
(2013)
The duration of gastrin treatment affects global gene expression and molecular responses involved in ER stress and anti-apoptosis.
BMC Genomics
Vitenskapelig artikkel
-
Tripathi, Sushil;
Christie, KR;
Balakrishnan, Ravin;
Huntley, R;
Hill, DP;
Thommesen, Liv;
Blake, JA;
Kuiper, Martin;
Lægreid, Astrid.
(2013)
Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.
Database: The Journal of Biological Databases and Curation
Vitenskapelig artikkel
-
Misund, Kristine;
Selvik, Linn-Karina M.;
Rao, Shalini;
Nørsett, Kristin Gabestad;
Bakke, Ingunn;
Sandvik, Arne;
Lægreid, Astrid;
Bruland, Torunn;
Prestvik, Wenche S;
Thommesen, Liv.
(2013)
NR4A2 is regulated by Gastrin and involved in gastrin-induced migration and invasion of gastric adenocarcinoma cells.
PLOS ONE
Vitenskapelig artikkel
-
Chawla, Konika;
Tripathi, Sushil;
Thommesen, Liv;
Lægreid, Astrid;
Kuiper, Martin.
(2013)
TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.
Bioinformatics
Vitenskapelig artikkel
-
Steigedal, Tonje;
Prestvik, Wenche S;
Selvik, Linn-Karina M.;
Fjeldbo, Christina Sæten;
Bruland, Torunn;
Lægreid, Astrid;
Thommesen, Liv.
(2013)
Gastrin-induced proliferation involves MEK partner 1 (MP1).
In vitro Cellular & Developmental Biology-Animal
Vitenskapelig artikkel
2012
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Fjeldbo, Christina Sæten;
Bakke, Ingunn;
Erlandsen, Sten Even;
Holmseth, Jannicke;
Lægreid, Astrid;
Sandvik, Arne Kristian;
Thommesen, Liv;
Bruland, Torunn.
(2012)
Gastrin upregulates the pro-survival factor secretory clusterin (sCLU) in adenocarcinoma cells and in oxyntic mucosa of hypergastrinemic rats.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Vitenskapelig artikkel
-
Nydal, Rune;
Efstathiou, Sophia;
Lægreid, Astrid.
(2012)
Crossover Research: Exploring a Collaborative Mode of Integration.
Vitenskapelig kapittel
2010
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Fjeldbo, Christina Sæten;
Misund, Kristine;
Günther, Clara-Cecilie;
Langaas, Mette;
Steigedal, Tonje;
Thommesen, Liv;
Lægreid, Astrid;
Bruland, Torunn.
(2010)
Functional studies on RNA-transfected cell microarrays.
Methods in molecular biology
Vitenskapelig artikkel
-
Jørgensen, Katarina;
Felberg, Hanne Solvang;
Berge, Rolf K.;
Lægreid, Astrid;
Johansen, Berit.
(2010)
Platelet activating factor stimulates arachidonic acid release in differentiated keratinocytes via arachidonyl non-selective phospholipase A(2).
Archives of Dermatological Research
Vitenskapelig artikkel
2009
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Hvidsten, Torgeir;
Lægreid, Astrid;
Kryshtafovych, Andriy;
Andersson, Gunnar;
Fidelis, Krzysztof;
Komorowski, J.
(2009)
A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.
PLOS ONE
Vitenskapelig artikkel
-
Lægreid, Astrid;
Feilberg, Julie.
(2009)
Using the classification system for institutional profiling : the Norwegian University of Science and technology.
Vitenskapelig kapittel
2008
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Fjeldbo, Christina Sæten;
Misund, Kristine;
Gunther, Clara-Cecilie;
Langaas, Mette;
Steigedal, Tonje;
Thommesen, Liv;
Lægreid, Astrid;
Bruland, Torunn.
(2008)
Functional studies on transfected cell microarray analysed by linear regression modelling.
Nucleic Acids Research (NAR)
Vitenskapelig artikkel
-
Nørsett, Kristin;
Lægreid, Astrid;
Kusnierczyk, Waclaw;
Langaas, Mette;
Ylving, S;
Fossmark, Reidar;
Myhre, Simen;
Falkmer, Sture Emil;
Waldum, Helge;
Sandvik, Arne Kristian.
(2008)
Changes in gene expression of gastric mucosa during therapeutic acid inhibition.
European Journal of Gastroenterology and Hepathology
Vitenskapelig artikkel
-
Hofsli, Eva;
Wheeler, Tommy L.;
Langaas, Mette;
Lægreid, Astrid;
Thommesen, Liv.
(2008)
Identification of novel neuroendocrine-specific tumour genes.
British Journal of Cancer
Vitenskapelig artikkel
-
Fjeldbo, Christina Sæten;
Misund, Kristine;
Günther, Clara-Cecilie;
Langaas, Mette;
Steigedal, Tonje Strømmen;
Thommesen, Liv;
Lægreid, Astrid;
Bruland, Torunn.
(2008)
Functional studies on transfected cell microarray analysed by linear regression modelling.
Nucleic Acids Research (NAR)
Vitenskapelig artikkel
-
Hofsli, Eva;
Wheeler, Tom Even;
Langaas, Mette;
Lægreid, Astrid;
Thommesen, Liv.
(2008)
Identification of novel neuroendocrine-specific tumour genes.
British Journal of Cancer
Vitenskapelig artikkel
2007
-
Misund, Kristine;
Steigedal, Tonje Strømmen;
Lægreid, Astrid;
Thommesen, Liv.
(2007)
Inducible cAMP early repressor splice variants ICER I and IIgamma both repress transcription of c-fos and chromogranin A.
Journal of Cellular Biochemistry
Vitenskapelig artikkel
-
Sætre, Rune;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Stunes, Kamilla;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Webprot : online mining and annotation of biomedical literature using Google.
Vitenskapelig kapittel
-
Misund, Kristine;
Steigedal, Tonje;
Lægreid, Astrid;
Thommesen, Liv.
(2007)
Inducible cAMP early repressor splice variants ICER I and II gamma both repress transcription of c-fos and chromogranin A.
Journal of Cellular Biochemistry
Vitenskapelig artikkel
-
Steigedal, Tonje;
Bruland, Torunn;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Inducible cAMP early repressor suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Vitenskapelig artikkel
-
Beisvåg, Vidar;
Ellingsen, Øyvind;
Lægreid, Astrid;
Sandvik, Arne Kristian.
(2007)
Physiological Genomics of Heart Failure: From Technology to Physiology.
Norges teknisk-naturvitenskapelige universitet
Doktoravhandling
-
Steigedal, Tonje Strømmen;
Bruland, Torunn;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Inducible cAMP early repressor suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Vitenskapelig artikkel
-
Bruland, Torunn;
Anderssen, Endre;
Eitrem, Berit Doseth;
Bergum, Hallgeir;
Beisvåg, Vidar;
Lægreid, Astrid.
(2007)
Optimization of cDNA microarrays procedures using criteria that do not rely on external standards.
BMC Genomics
Vitenskapelig artikkel
2006
-
Myhre, S;
Tveit, Henrik;
Mollestad, Torulf;
Lægreid, Astrid.
(2006)
Additional Gene Ontology structure for improved biological reasoning.
Bioinformatics
Vitenskapelig artikkel
-
Beisvåg, Vidar;
Lehre, Per Kristian;
Midelfart, Herman;
Aass, H;
Geiran, O;
Sandvik, Arne Kristian;
Lægreid, Astrid;
Komorowski, Jan;
Ellingsen, Øyvind.
(2006)
Aetiology-specific patterns in end-stage heart failure patients identified by functional annotation and classification of microarray data.
European Journal of Heart Failure
Vitenskapelig artikkel
-
Beisvag, Vidar;
Lehre, PK;
Midelfart, H;
Aas, Halfdan;
Geiran, Odd;
Sandvik, Arne K;
Lægreid, A.;
Komorowski, J.;
Ellingsen, Øyvind.
(2006)
Aetiology-specific patterns in end-stage heart failure patients identified by functional annotation and classification of microarray data.
European Journal of Heart Failure
Vitenskapelig artikkel
-
Beisvåg, Vidar;
Jünge, Frode KR;
Bergum, Hallgeir;
Jølsum, Lars;
Lydersen, Stian;
Gunther, Clara-Cecilie;
Ramampiaro, Heri;
Langaas, Mette;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2006)
GeneTools - application for functional annotation and statistical hypothesis testing.
BMC Bioinformatics
Bokanmeldelse
-
Sandvik, Arne Kristian;
Alsberg, Bjørn Kåre;
Nørsett, Kristin;
Yadetie, Fekadu;
Waldum, Helge;
Lægreid, Astrid.
(2006)
Gene expression analysis and clinical diagnosis.
Clinica Chimica Acta
Vitenskapelig oversiktsartikkel
2005
-
Tveit, Amund;
Sætre, Rune;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
ProtChew: Automatic Extraction of Protein Names from Biomedical Literature.
Proceedings - International Conference on Data Engineering
Vitenskapelig artikkel
-
Sætre, Rune;
Tveit, Amund;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
Semantic annotation of biomedical literature using Google.
Lecture Notes in Computer Science (LNCS)
Vitenskapelig artikkel
-
Hofsli, Eva;
Thommesen, Liv;
Yadetie, Fekadu;
Langaas, Mette;
Sandvik, Arne K.;
Lægreid, Astrid.
(2005)
Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells.
British Journal of Cancer
Vitenskapelig artikkel
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Strømmen, Tonje;
Thommesen, Liv;
Stunes, Astrid Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating Protein Interactions Using Google and Gene Ontology.
Lecture Notes in Computer Science (LNCS)
Vitenskapelig artikkel
-
Thommesen, Liv;
Lægreid, Astrid.
(2005)
Distinct differences between TNF receptor 1-and TNF receptor 2-mediated activation of NF kappa B.
Journal of Biochemistry and Molecular Biology
Vitenskapelig artikkel
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Thommesen, Liv;
Stunes, Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating protein interactions using Google and Gene Ontology.
Vitenskapelig kapittel
-
Thommesen, Liv;
Lægreid, Astrid.
(2005)
Distinct differences between TNF receptor 1-and TNF receptor 2-mediated activation of NF kappa B.
Journal of Biochemistry and Molecular Biology
Vitenskapelig artikkel
-
Sæten, Christina;
Bruland, Torunn;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
Optimalisering av Transfekterte CellArray (TCA) for bruk i storskala hypothesetesting av genfunksjon.
IKM, NTNU
Masteroppgave
-
Sandvik, Arne Kristian;
Alsberg, Bjørn Kåre;
Nørsett, Kristin;
Yadetie, Fekadu;
Waldum, Helge;
Lægreid, Astrid.
(2005)
Gene expression analysis and clinical diagnosis.
Clinica Chimica Acta
Vitenskapelig oversiktsartikkel
-
Nørsett, Kristin;
Lægreid, Astrid;
Langaas, Mette;
Wørlund, Sara Maria;
Fossmark, Reidar;
Waldum, Helge;
Sandvik, Arne Kristian.
(2005)
Molecular characterization of rat gastric mucosal response to potent acid inhibition.
Physiological Genomics
Vitenskapelig artikkel
-
Hofsli, Eva;
Thommesen, Liv;
Yadetie, Fekadu;
Langaas, Mette;
Kusnierczyk, Waclaw;
Falkmer, Ursula;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2005)
Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells.
British Journal of Cancer
Vitenskapelig artikkel
-
Kusnierczyk, Waclaw;
Aamodt, Agnar;
Lægreid, Astrid.
(2005)
Knowledge-Intensive Case-Based Support for Automated Explanation of Biological Phenomena.
Vitenskapelig kapittel
2004
-
Yadetie, Fekadu;
Sandvik, Arne Kristian;
Bergum, Hallgeir;
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Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression.
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Drabløs, Finn;
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2003
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Komorowski, Jan;
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Bakke, Ingunn;
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DNA microarray analysis of liver gene expression in rats after longterm treatment with ciprofibrate.
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Hofsli, Eva;
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2001
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Sandvik, Arne K.;
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Måling av genaktivitet med DNA mikromatriser (mikroarray). Molekylære og teknologiske prinsipper.
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Tidsskrift for Den norske legeforening (Tidsskriftet)
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Jenssen, Tor-Kristian;
Lægreid, A.;
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A litterature network of human genes for high-throughput gene expression analysis.
Nature Genetics
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Sandvik, Arne K.;
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2000
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1998
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Thommesen, Liv;
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Holmeide, Anne Kristin;
Espevik, Terje;
Johansen, Berit;
Lægreid, Astrid.
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Selective inhibitors of cytosolic or secretory phospholipase A2 block TNF-induced activation of transcription factor nuclear factor-kappa B and expression of ICAM-1.
Journal of Immunology
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1996
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Medvedev, Andrei E.;
Lægreid, Astrid;
Sundan, Anders;
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A non-competitive P55 TNF receptor antibody enhances the specific activity of Lymphotoxin-_a.
Scandinavian Journal of Immunology
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1994
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Andersen, S;
Sjursen, W;
Lægreid, A;
Austgulen, Rigmor;
Johansen, B.
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Immunohistologic detection of non-pancreatic phospholipase A2 (type II) in human placenta and its possible involvement in normal parturition at term.
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ProtChew: Automatic Extraction of Protein Names from Biomedical Literature.
Proceedings - International Conference on Data Engineering
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Sætre, Rune;
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Lægreid, Astrid.
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Semantic annotation of biomedical literature using Google.
Lecture Notes in Computer Science (LNCS)
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Lægreid, Astrid;
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Smith-Sørensen, Birgitte;
Beisvåg, Vidar;
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Nygaard, Vigdis.
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Bakke, Ingunn;
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Carbon, Seth J.;
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Dodson, RJ.
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Touré, Vasundra;
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Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction.
Frontiers in Physiology
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Lægreid, Astrid;
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Genome Research
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Yadetie, Fekadu;
Lægreid, Astrid;
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Liver gene expression in rats in response to the peroxisome proliferator-activated receptor alpha agonist ciprofibrate.
Physiological Genomics
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Sandvik, Arne K.;
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Lægreid, Astrid;
Bruland, Torunn.
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Functional studies on transfected cell microarray analysed by linear regression modelling.
Nucleic Acids Research (NAR)
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Hofsli, Eva;
Thommesen, Liv;
Yadetie, Fekadu;
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Lægreid, Astrid.
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British Journal of Cancer
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Efstathiou, Sophia;
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Scientific knowledge in the age of computation: Explicated, computable and manageable?.
Theoria. An international Journal of Theory, History and Foundations of Science
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Johansen, Berit.
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Platelet-activating factor induces proliferation in differentiated keratinocytes.
Molecular and Cellular Biochemistry
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Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
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gProt: Annotating Protein Interactions Using Google and Gene Ontology.
Lecture Notes in Computer Science (LNCS)
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Nørsett, Kristin;
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Langaas, Mette;
Ylving, S;
Fossmark, Reidar;
Myhre, Simen;
Falkmer, Sture Emil;
Waldum, Helge;
Sandvik, Arne Kristian.
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Changes in gene expression of gastric mucosa during therapeutic acid inhibition.
European Journal of Gastroenterology and Hepathology
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Misund, Kristine;
Steigedal, Tonje Strømmen;
Lægreid, Astrid;
Thommesen, Liv.
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Inducible cAMP early repressor splice variants ICER I and IIgamma both repress transcription of c-fos and chromogranin A.
Journal of Cellular Biochemistry
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Hofsli, Eva;
Nørsett, Kristin;
Sandvik, Arne Kristian;
Lægreid, Astrid.
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Expression of chromogranin A and somatostatin receptors in pancreatic AR42J cells.
Molecular and Cellular Endocrinology
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Thommesen, Liv;
Lægreid, Astrid.
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Distinct differences between TNF receptor 1-and TNF receptor 2-mediated activation of NF kappa B.
Journal of Biochemistry and Molecular Biology
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Cortés, Belén Juanes;
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Logie, Colin;
Schulz, Stefan;
Roldán-García, María del Mar;
Kuiper, Martin;
Fernández-Breis, Jesualdo Tomás.
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Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
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Myhre, S;
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Additional Gene Ontology structure for improved biological reasoning.
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Folkesson, Evelina;
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High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids.
Scientific Reports
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PLoS Computational Biology
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ExTRI: Extraction of transcription regulation interactions from literature.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
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Sandvik, Arne K.;
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Nørsett, Kristin;
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Midelfart, Herman;
Erlandsen, Sten Even;
Falkmer, Sture Emil;
Grønbech, Jon Erik;
Waldum, Helge;
Komorowski, Jan;
Sandvik, Arne Kristian.
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Gene expression based classification of gastric carcinoma.
Cancer Letters
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Thommesen, Liv;
Sjursen, Wenche;
Gåsvik, Kathrine;
Hanssen, Wenche;
Brekke, Ole-Lars;
Skattebøl, Lars;
Holmeide, Anne Kristin;
Espevik, Terje;
Johansen, Berit;
Lægreid, Astrid.
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Selective inhibitors of cytosolic or secretory phospholipase A2 block TNF-induced activation of transcription factor nuclear factor-kappa B and expression of ICAM-1.
Journal of Immunology
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Müller-Dott, Sophia;
Tsirvouli, Eirini;
Vazquez, Miguel;
Flores, Ricardo O Ramirez;
Badia-I-Mompel, Pau;
Fallegger, Robin;
Türei, Dénes;
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Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities.
Nucleic Acids Research (NAR)
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Thommesen, Liv;
Lægreid, Astrid.
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Distinct differences between TNF receptor 1-and TNF receptor 2-mediated activation of NF kappa B.
Journal of Biochemistry and Molecular Biology
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Vera-Ramos, Jose Antonio;
Juanes-Cortes, Belen;
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Kuiper, Martin;
Lægreid, Astrid;
Logie, Colin;
Roldan-Garcia, Maria del Mar;
Schulz, Stefan.
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CEUR Workshop Proceedings
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Flikka, K;
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BMC Bioinformatics
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Yadetie, Fekadu;
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Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression.
BMC Biotechnology
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Orchard, Sandra;
Ammari, M;
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Briganti, L;
Broackes-Carter, F;
Campbell, NH;
Chavali, G;
Chen, C;
Del-Toro, N.
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The MIntAct project - IntAct as a common curation platform for 11 molecular interaction databases.
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Hofsli, Eva;
Wheeler, Tommy L.;
Langaas, Mette;
Lægreid, Astrid;
Thommesen, Liv.
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Identification of novel neuroendocrine-specific tumour genes.
British Journal of Cancer
Vitenskapelig artikkel
-
Beisvåg, Vidar;
Lehre, Per Kristian;
Midelfart, Herman;
Aass, H;
Geiran, O;
Sandvik, Arne Kristian;
Lægreid, Astrid;
Komorowski, Jan;
Ellingsen, Øyvind.
(2006)
Aetiology-specific patterns in end-stage heart failure patients identified by functional annotation and classification of microarray data.
European Journal of Heart Failure
Vitenskapelig artikkel
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Thommesen, Liv;
Nørsett, Kristin;
Hofsli, Eva;
Sandvik, AK;
Lægreid, Astrid.
(2000)
Regulation of inducible cAMP early repressor expression by gastrin and cholecystokinin in the pancreatic cell line AR42J.
Journal of Biological Chemistry
Vitenskapelig artikkel
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Fjeldbo, Christina Sæten;
Misund, Kristine;
Günther, Clara-Cecilie;
Langaas, Mette;
Steigedal, Tonje Strømmen;
Thommesen, Liv;
Lægreid, Astrid;
Bruland, Torunn.
(2008)
Functional studies on transfected cell microarray analysed by linear regression modelling.
Nucleic Acids Research (NAR)
Vitenskapelig artikkel
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Misund, Kristine;
Steigedal, Tonje;
Lægreid, Astrid;
Thommesen, Liv.
(2007)
Inducible cAMP early repressor splice variants ICER I and II gamma both repress transcription of c-fos and chromogranin A.
Journal of Cellular Biochemistry
Vitenskapelig artikkel
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Selvik, Linn-Karina M.;
Fjeldbo, Christina Sæten;
Flatberg, Arnar;
Steigedal, Tonje;
Misund, Kristine;
Anderssen, Endre;
Doseth, Berit;
Langaas, Mette;
Tripathi, Sushil;
Beisvag, Vidar.
(2013)
The duration of gastrin treatment affects global gene expression and molecular responses involved in ER stress and anti-apoptosis.
BMC Genomics
Vitenskapelig artikkel
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Heck, Kathleen;
Lindholm, Håvard Takle;
Niederdorfer, Barbara;
Tsirvouli, Eirini;
Kuiper, Martin;
Flobak, Åsmund;
Lægreid, Astrid Renner;
Thommesen, Liv.
(2023)
Characterisation of Colorectal Cancer Cell Lines through Proteomic Profiling of Their Extracellular Vesicles.
Proteomes
Vitenskapelig artikkel
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Medvedev, Andrei E.;
Lægreid, Astrid;
Sundan, Anders;
Espevik, Terje.
(1996)
A non-competitive P55 TNF receptor antibody enhances the specific activity of Lymphotoxin-_a.
Scandinavian Journal of Immunology
Vitenskapelig artikkel
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Selvik, Linn-Karina M.;
Rao, Shalini;
Steigedal, Tonje;
Haltbakk, Ildri;
Misund, Kristine;
Bruland, Torunn;
Prestvik, Wenche S;
Lægreid, Astrid;
Thommesen, Liv.
(2014)
Salt-inducible kinase 1 (SIK1) is induced by gastrin and inhibits migration of gastric adenocarcinoma cells.
PLOS ONE
Vitenskapelig artikkel
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Steigedal, Tonje;
Bruland, Torunn;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Inducible cAMP early repressor suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Vitenskapelig artikkel
-
Hofsli, Eva;
Wheeler, Tom Even;
Langaas, Mette;
Lægreid, Astrid;
Thommesen, Liv.
(2008)
Identification of novel neuroendocrine-specific tumour genes.
British Journal of Cancer
Vitenskapelig artikkel
-
Tripathi, Sushil;
Christie, KR;
Balakrishnan, Ravin;
Huntley, R;
Hill, DP;
Thommesen, Liv;
Blake, JA;
Kuiper, Martin;
Lægreid, Astrid.
(2013)
Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.
Database: The Journal of Biological Databases and Curation
Vitenskapelig artikkel
-
Lægreid, A.;
Komorowski, J.;
Sandvik, Arne K.;
Hovig, Eivind;
Forus, Anne;
Smith-Sørensen, Birgitte;
Beisvag, Vidar;
Kristiansen, B.;
Nørsett, K.;
Nygaard, Vegard.
(2001)
DNA mikroarray- vindu mot tusentals gen.
NBS-nytt
Vitenskapelig artikkel
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Hvidsten, Torgeir;
Lægreid, Astrid;
Kryshtafovych, Andriy;
Andersson, Gunnar;
Fidelis, Krzysztof;
Komorowski, J.
(2009)
A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity.
PLOS ONE
Vitenskapelig artikkel
-
Beisvag, Vidar;
Lehre, PK;
Midelfart, H;
Aas, Halfdan;
Geiran, Odd;
Sandvik, Arne K;
Lægreid, A.;
Komorowski, J.;
Ellingsen, Øyvind.
(2006)
Aetiology-specific patterns in end-stage heart failure patients identified by functional annotation and classification of microarray data.
European Journal of Heart Failure
Vitenskapelig artikkel
-
Komorowski, J.;
Hvidstaen, T.R.;
Jenssen, Tor-Kristian;
Tjedvoll, D.;
Hovig, Eivind;
Lægreid, A.;
Sandvik, Arne K..
(2001)
Mot kunnskapsoppdagelse fra DNA mikromatise uttrykksdata.
Tidsskrift for Den norske legeforening (Tidsskriftet)
Vitenskapelig artikkel
-
Misund, Kristine;
Selvik, Linn-Karina M.;
Rao, Shalini;
Nørsett, Kristin Gabestad;
Bakke, Ingunn;
Sandvik, Arne;
Lægreid, Astrid;
Bruland, Torunn;
Prestvik, Wenche S;
Thommesen, Liv.
(2013)
NR4A2 is regulated by Gastrin and involved in gastrin-induced migration and invasion of gastric adenocarcinoma cells.
PLOS ONE
Vitenskapelig artikkel
-
Jenssen, Tor-Kristian;
Lægreid, A.;
Komorowski, J.;
Hovig, Eivind.
(2001)
A litterature network of human genes for high-throughput gene expression analysis.
Nature Genetics
Vitenskapelig artikkel
-
Beisvåg, Vidar;
Jünge, Frode KR;
Bergum, Hallgeir;
Jølsum, Lars;
Lydersen, Stian;
Gunther, Clara-Cecilie;
Ramampiaro, Heri;
Langaas, Mette;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2006)
GeneTools - application for functional annotation and statistical hypothesis testing.
BMC Bioinformatics
Bokanmeldelse
-
Sandvik, Arne K.;
Støren, O.;
Nørsett, K.;
Børresen-Dale, Anne-Lise;
Lægreid, A.;
Myklebost, Ola.
(2001)
Måling av genaktivitet med DNA mikromatriser (mikroarray). Molekylære og teknologiske prinsipper.
Tidsskrift for Den norske legeforening (Tidsskriftet)
Vitenskapelig artikkel
-
Chawla, Konika;
Tripathi, Sushil;
Thommesen, Liv;
Lægreid, Astrid;
Kuiper, Martin.
(2013)
TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.
Bioinformatics
Vitenskapelig artikkel
-
Tripathi, Sushil;
Flobak, Åsmund;
Chawla, Konika;
Baudot, Anaïs;
Bruland, Torunn;
Thommesen, Liv;
Kuiper, Martin Tremen R.;
Lægreid, Astrid.
(2015)
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
BMC Systems Biology
Vitenskapelig artikkel
-
Carbon, Seth J.;
Douglass, Eric;
Good, Benjamin M;
Unni, Deepak R;
Harris, Nomi L.;
Mungall, Christopher J.;
Basu, Siddartha;
Chisholm, Rex L.;
Dodson, Robert J.;
Hartline, Eric.
(2021)
The Gene Ontology resource: enriching a GOld mine.
Nucleic Acids Research (NAR)
Vitenskapelig artikkel
-
Fjeldbo, Christina Sæten;
Misund, Kristine;
Günther, Clara-Cecilie;
Langaas, Mette;
Steigedal, Tonje;
Thommesen, Liv;
Lægreid, Astrid;
Bruland, Torunn.
(2010)
Functional studies on RNA-transfected cell microarrays.
Methods in molecular biology
Vitenskapelig artikkel
-
Flikka, Kristian;
Yadetie, Fekadu;
Lægreid, Astrid;
Jonassen, Inge.
(2004)
XHM: A system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinformatics
Vitenskapelig artikkel
-
Andersen, S;
Sjursen, W;
Lægreid, A;
Austgulen, Rigmor;
Johansen, B.
(1994)
Immunohistologic detection of non-pancreatic phospholipase A2 (type II) in human placenta and its possible involvement in normal parturition at term.
Prostaglandins, Leukotrienes and Essential Fatty Acids
Vitenskapelig artikkel
-
Menden, Michael Patrick;
Wang, Dennis;
Mason, Mike J.;
Szalai, Bence;
Bulusu, Krishna C.;
Guan, Yuanfang;
Flobak, Åsmund;
Kuiper, Martin;
Lægreid, Astrid;
Thommesen, Liv.
(2019)
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Nature Communications
Vitenskapelig artikkel
-
Flikka, Kristian;
Yadetie, Fekadu;
Lægreid, Astrid;
Jonassen, Inge.
(2004)
XHM: a system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinformatics
Vitenskapelig artikkel
-
Sandvik, Arne Kristian;
Alsberg, Bjørn Kåre;
Nørsett, Kristin;
Yadetie, Fekadu;
Waldum, Helge;
Lægreid, Astrid.
(2005)
Gene expression analysis and clinical diagnosis.
Clinica Chimica Acta
Vitenskapelig oversiktsartikkel
-
Flikka, Kristian;
Yadetie, Fekadu;
Lægreid, Astrid;
Jonassen, Inge.
(2004)
XHM: a system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinformatics
Vitenskapelig artikkel
-
Yadetie, Fekadu;
Sandvik, Arne Kristian;
Bergum, Hallgeir;
Nørsett, Kristin;
Lægreid, Astrid.
(2004)
Miniaturized fluorescent RNA dot blot method for rapid quantitation of gene expression.
BMC Biotechnology
Vitenskapelig artikkel
-
Sandvik, Arne Kristian;
Alsberg, Bjørn Kåre;
Nørsett, Kristin;
Yadetie, Fekadu;
Waldum, Helge;
Lægreid, Astrid.
(2006)
Gene expression analysis and clinical diagnosis.
Clinica Chimica Acta
Vitenskapelig oversiktsartikkel
-
Steigedal, Tonje Strømmen;
Bruland, Torunn;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Inducible cAMP early repressor suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Vitenskapelig artikkel
-
Folkesson, Evelina;
Niederdorfer, Barbara;
Nakstad, Vu To;
Thommesen, Liv;
Klinkenberg, Geir;
Lægreid, Astrid;
Flobak, Åsmund.
(2020)
Author Correction: High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids (Scientific Reports, (2020), 10, 1, (11574), 10.1038/s41598-020-68441-0).
Scientific Reports
Korrigendum
-
Jørgensen, Katarina;
Felberg, Hanne Solvang;
Berge, Rolf K.;
Lægreid, Astrid;
Johansen, Berit.
(2010)
Platelet activating factor stimulates arachidonic acid release in differentiated keratinocytes via arachidonyl non-selective phospholipase A(2).
Archives of Dermatological Research
Vitenskapelig artikkel
-
Yadetie, Fekadu;
Lægreid, Astrid;
Bakke, Ingunn;
Kusnierczyk, Waclaw;
Komorowski, Jan;
Waldum, Helge;
Sandvik, Arne Kristian.
(2003)
Liver gene expression in rats in response to the peroxisome proliferator-activated receptor-{alpha} agonist ciprofibrate.
Physiological Genomics
Vitenskapelig artikkel
-
Touré, Vasundra;
Vercruysse, Steven;
Acencio, Marcio Luis;
Lovering, Ruth C.;
Orchard, Sandra;
Bradley, Glyn;
Casals-Casas, Cristina;
Chaouiya, Claudine;
del-Toro, Noemi;
Flobak, Åsmund.
(2020)
The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST).
Bioinformatics
Vitenskapelig artikkel
-
Lovering, Ruth C.;
Gaudet, Pascale;
Acencio, Marcio Luis;
Ignatchenko, Alex;
Jolma, Arttu;
Fornes, Oriol;
Kuiper, Martin;
Kulakovskiy, Ivan V.;
Lægreid, Astrid;
Martin, Maria J..
(2021)
A GO catalogue of human DNA-binding transcription factors.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Vitenskapelig artikkel
-
Nørsett, Kristin;
Lægreid, Astrid;
Midelfart, H;
Yadetie, Fekadu;
Erlandsen, S.E.;
Falkmer, Sture Emil;
Grønbech, Jon Erik;
Waldum, Helge;
Komorowski, Jan;
Sandvik, Arne Kristian.
(2003)
Gene expression based classification of gastric carcinoma.
Cancer Letters
Vitenskapelig artikkel
-
Nørsett, Kristin;
Lægreid, Astrid;
Langaas, Mette;
Wørlund, Sara Maria;
Fossmark, Reidar;
Waldum, Helge;
Sandvik, Arne Kristian.
(2005)
Molecular characterization of rat gastric mucosal response to potent acid inhibition.
Physiological Genomics
Vitenskapelig artikkel
-
Hofsli, Eva;
Thommesen, Liv;
Yadetie, Fekadu;
Langaas, Mette;
Kusnierczyk, Waclaw;
Falkmer, Ursula;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2005)
Identification of novel growth factor-responsive genes in neuroendocrine gastrointestinal tumour cells.
British Journal of Cancer
Vitenskapelig artikkel
-
Komorowski, Jan;
Lægreid, Astrid;
Hvidsten, Torgeir Rhoden.
(2003)
Learning rule-based models from gene expression time profiles annotated using Gene Ontology.
Bioinformatics
Vitenskapelig artikkel
-
Venkatesan, Aravind;
Tripathi, Sushil;
Galdeano, Alejandro Sanz de;
Blondé, Ward;
Lægreid, Astrid;
Mironov, Vladimir;
Kuiper, Martin.
(2014)
Finding gene regulatory network candidates using the gene expression knowledge base.
BMC Bioinformatics
Vitenskapelig artikkel
-
Tripathi, Sushil;
Vercruysse, Steven;
Chawla, Konika;
Christie, Karen R.;
Blake, Judith A;
Huntley, Rachael P.;
Orchard, Sandra;
Hermjakob, Henning;
Thommesen, Liv;
Lægreid, Astrid.
(2016)
Gene regulation knowledge commons: community action takes care of DNA binding transcription factors.
Database: The Journal of Biological Databases and Curation
Vitenskapelig artikkel
-
Sandvik, Arne Kristian;
Støren, O;
Nørsett, Kristin;
Børresen-Dale, AL;
Lægreid, Astrid;
Myklebost, O.
(2001)
Måling av genaktivitet med DNA mikromatriser (microarray). Molekylære og teknologiske prinsipper.
Tidsskrift for Den norske legeforening (Tidsskriftet)
Vitenskapelig artikkel
-
Lægreid, Astrid;
Solberg, Berge;
Faxvaag, Arild.
(2001)
Genomforskning og genteknologi. Nye muligheiter for diagnostikkog behandling.
Revmatikeren
Populærvitenskapelig artikkel
-
Bakke, Ingunn;
Yadetie, Fekadu;
Sandvik, Arne Kristian;
Kusnierczyk, W;
Waldum, Helge;
Lægreid, Astrid.
(2003)
DNA microarray analysis of liver gene expression in rats after longterm treatment with ciprofibrate.
Physiological Genomics
Vitenskapelig artikkel
-
Komorowski, Jan;
Hvidsten, TR;
Jenssen, T-K;
Hovig, E;
Lægreid, Astrid;
Sandvik, Arne Kristian.
(2001)
Mot kunnskapsoppdagelse fra DNA mikromatrise (microarray) genuttrykksdata.
Tidsskrift for Den norske legeforening (Tidsskriftet)
Vitenskapelig artikkel
-
Hvidsten, TR;
Komorowski, Jan;
Sandvik, Arne Kristian;
Lægreid, Astrid.
(2001)
Predicting gene function for gene expressions and ontologies.
Proceedings Pacific Symposium on Biocomputing
Vitenskapelig artikkel
-
Fjeldbo, Christina Sæten;
Bakke, Ingunn;
Erlandsen, Sten Even;
Holmseth, Jannicke;
Lægreid, Astrid;
Sandvik, Arne Kristian;
Thommesen, Liv;
Bruland, Torunn.
(2012)
Gastrin upregulates the pro-survival factor secretory clusterin (sCLU) in adenocarcinoma cells and in oxyntic mucosa of hypergastrinemic rats.
American Journal of Physiology - Gastrointestinal and Liver Physiology
Vitenskapelig artikkel
-
Gaudet, Pascale;
Logie, Colin;
Lovering, Ruth C.;
Kuiper, Martin;
Lægreid, Astrid;
Thomas, Paul D..
(2021)
Gene Ontology representation for transcription factor functions.
Biochimica et Biophysica Acta. Gene Regulatory Mechanisms
Vitenskapelig artikkel
-
Steigedal, Tonje;
Prestvik, Wenche S;
Selvik, Linn-Karina M.;
Fjeldbo, Christina Sæten;
Bruland, Torunn;
Lægreid, Astrid;
Thommesen, Liv.
(2013)
Gastrin-induced proliferation involves MEK partner 1 (MP1).
In vitro Cellular & Developmental Biology-Animal
Vitenskapelig artikkel
-
Bruland, Torunn;
Anderssen, Endre;
Eitrem, Berit Doseth;
Bergum, Hallgeir;
Beisvåg, Vidar;
Lægreid, Astrid.
(2007)
Optimization of cDNA microarrays procedures using criteria that do not rely on external standards.
BMC Genomics
Vitenskapelig artikkel
Del av bok/rapport
-
Sætre, Rune;
Tveit, Amund;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Thommesen, Liv;
Stunes, Kamilla;
Lægreid, Astrid.
(2005)
gProt: Annotating protein interactions using Google and Gene Ontology.
Vitenskapelig kapittel
-
Sætre, Rune;
Ranang, Martin Thorsen;
Steigedal, Tonje Strømmen;
Stunes, Kamilla;
Misund, Kristine;
Thommesen, Liv;
Lægreid, Astrid.
(2007)
Webprot : online mining and annotation of biomedical literature using Google.
Vitenskapelig kapittel
-
Drabløs, Finn;
Hammer, Mikael;
Lægreid, Astrid;
Hauglid, Jon Olav;
Alsberg, Bjørn Kåre.
(2004)
Bioinformatics.
Vitenskapelig kapittel
-
Lægreid, Astrid;
Feilberg, Julie.
(2009)
Using the classification system for institutional profiling : the Norwegian University of Science and technology.
Vitenskapelig kapittel
-
Kusnierczyk, Waclaw;
Aamodt, Agnar;
Lægreid, Astrid.
(2005)
Knowledge-Intensive Case-Based Support for Automated Explanation of Biological Phenomena.
Vitenskapelig kapittel
-
Nydal, Rune;
Efstathiou, Sophia;
Lægreid, Astrid.
(2012)
Crossover Research: Exploring a Collaborative Mode of Integration.
Vitenskapelig kapittel
Studentoppgave eller avhandling
-
Sæten, Christina;
Bruland, Torunn;
Strømmen, Tonje;
Lægreid, Astrid.
(2005)
Optimalisering av Transfekterte CellArray (TCA) for bruk i storskala hypothesetesting av genfunksjon.
IKM, NTNU
Masteroppgave
-
Beisvåg, Vidar;
Ellingsen, Øyvind;
Lægreid, Astrid;
Sandvik, Arne Kristian.
(2007)
Physiological Genomics of Heart Failure: From Technology to Physiology.
Norges teknisk-naturvitenskapelige universitet
Doktoravhandling
Formidling
2023
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KonferanseposterRingers, Christa; Holmberg, David; Georgiev, Polina; Lægreid, Astrid Renner; Carreras-Puigvert, Jordi; Flobak, Åsmund; Spjuth, Ola. (2023) Morphological profiling by Cell Painting to capture colorectal cancer disease heterogeneity. Cytodata
2022
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KonferanseposterRingers, Christa Nelleke; Georgiev, Polina; Lægreid, Astrid Renner; Carreras-Puigvert, Jordi; Flobak, Åsmund; Spjuth, Ola. (2022) Morphological profiling to capture colorectal cancer disease heterogeneity. PhenoTarget 2022 Conference
2018
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KonferanseforedragAcencio, Marcio Luis; Krallinger, Martin; Kuiper, Martin; Lægreid, Astrid. (2018) Mining DbTF-TG causal interactions from biomedical literature. GREEKC CA15205: Ontologies for the Gene Regulation Knowledge Commons, and Database 'FAIRness' Short description:
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KonferanseposterTouré, Vasundra; Flobak, Åsmund; Lægreid, Astrid; Kuiper, Martin. (2018) Knowledge management and standard representation of causal statements for systems modeling. JOBIM 2018
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ForedragNiederdorfer, Barbara; Vázquez, Miguel; Thommesen, Liv; Kuiper, Martin; Lægreid, Astrid; Flobak, Åsmund. (2018) Logical model simulations predict drug synergies across different cancer cell lines. ISMB 2018
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KonferanseforedragNydal, Rune; Lægreid, Astrid; Kuiper, Martin; Gabrielsen, Ane Møller. (2018) Introduction. Visions for Life Science Knowledge Commons. Visions for Life Science Knowledge Commons
2017
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KonferanseposterTouré, Vasundra; Flobak, Åsmund; Lægreid, Astrid; Kuiper, Martin Tremen R.. (2017) Extraction and representation of causal statements: Creating a model building resource for Systems Biology. COMBINE 2017
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KonferanseforedragAcencio, Marcio Luis; Vázquez, Miguel; Kuiper, Martin; Lægreid, Astrid. (2017) DbTF-TG interactions and regulatory relationships: a survey. Curation workshop on molecular and causal interactions
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ForedragAcencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin; Thommesen, Liv; Leitner, Florian; Krallinger, Martin; Lourenço, Analia; Vázquez, Miguel; Valencia, Alfonso. (2017) NTNU DbTF Curation: current status and Mining Transcription Regulation Information from Literature. Short Research Stay at the European Bioinformatics Institute (EBI)
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KonferanseforedragAcencio, Marcio Luis; Lægreid, Astrid. (2017) Representation of sequence-specific DNA binding transcription factors (DbTFs) complexes. Curation workshop on molecular and causal interactions
2016
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KonferanseforedragNydal, Rune; Lægreid, Astrid; Kuiper, Martin. (2016) Curation strategeis of NTNU project. Workshop upstart crossover at EBI
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ForedragAcencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin. (2016) Knowledge Commons digitalization - curation. Crossover Seminar
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ForedragAcencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin. (2016) Causal statements for Gene Regulation & Signal Transduction: what can be done in PSI-MI. HUPO-PSI meeting 2016
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KonferanseposterFlobak, Åsmund; Steigedal, Tonje S.; Thommesen, Liv; Kuiper, Martin Tremen R.; Lægreid, Astrid. (2016) Logical models for drug screen prioritization. European Conference on Computational Biology
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KonferanseforedragLægreid, Astrid. (2016) Why we need the Knowledge Commons. Today's biology is not possible without. Science for the common good – visions of technological opportunities
2014
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KonferanseposterKuiper, Martin; Lægreid, Astrid. (2014) The GRECO initiative: taking care of Gene Regulation knowledge. Virtual Physiological Human Conference 2014
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KonferanseposterVange, Pål; Beisvag, Vidar; Flatberg, Arnar; Afroz, Wahida; Nordrum, Ivar Skjåk; Sørdal, Øystein Finset; Qvigstad, Gunnar; Thommesen, Liv; Lægreid, Astrid; Sandvik, Arne Kristian. (2014) Molecular mechanisms of cellular stress responses in gastric cancer. Digestive Disease Week 2014
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KonferanseposterFlobak, Åsmund; Baudot, Anaïs; Remy, Elisabeth; Thommesen, Liv; Thieffry, Denis; Kuiper, Martin; Lægreid, Astrid. (2014) Drug synergies in a gastric cancer cell line discovered by signal transduction modeling. Virtual Physiological Human Conference 2014
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KonferanseposterKuiper, Martin; Mironov, Vladimir; Venkatesan, Aravind; Tripathi, Sushil; Blondé, Ward; Galdeano, Alejandro Sanz de; Lægreid, Astrid. (2014) The gene expression knowledge base. Virtual Physiological Human Conference 2014
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ForedragNydal, Rune; Efstathiou, Sophia; Lægreid, Astrid; Kuiper, Martin. (2014) Setting the stage: Tragedy of the knowledge commons. Knowledge management and the futures of our society, a Virtual Physiological Human 2014 Satellite Workshop
2013
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KonferanseposterRao, Shalini; Selvik, Linn-Karina M.; Nørsett, Kristin Gabestad; Bakke, Ingunn; Misund, Kristine; Bruland, Torunn; S, Prestvik Wenche; Lægreid, Astrid; Thommesen, Liv. (2013) NR4A2 is regulated by gastrin and influences cellular responses in gastric adenocarcinoma cells. Nuclear receptors: Linking molecules, genomes & physiology
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KonferanseposterRao, Shalini; Thommesen, Liv; Nørsett, Kristin; Bakke, Ingunn; Misund, Kristine; Bruland, Torunn; Prestvik, Wenche S; Lægreid, Astrid. (2013) Nr4A2 is regulated by gastrin and influences cellular responses in gastric adenocarcinoma cells. Kontaktmøte Norsk Biokjemisk Selskap
2012
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KonferanseforedragEfstathiou, Sophia; Carusi, Annamaria; Kuiper, Martin; Lægreid, Astrid; Nydal, Rune. (2012) Research Systems for Systems Biology. European Meetings on Cybernetics and Systems Research
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KonferanseforedragEfstathiou, Sophia; Nydal, Rune; Carusi, Annamaria; Kuiper, Martin; Lægreid, Astrid. (2012) Well-constructed systems biology: Integrating socio-humanist research. European Meetings on Cybernetics and Systems Research
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KonferanseforedragEfstathiou, Sophia; Nydal, Rune; Kuiper, Martin; Lægreid, Astrid; Carusi, Annamaria. (2012) When ‘Knowledge’ Becomes Something to Manage. Society for the Study of Nanoscience and Emerging Technologies
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KonferanseforedragNydal, Rune; Efstathiou, Sophia; Lægreid, Astrid. (2012) Widening the circles of collaboration - Integrating philosophy in systems biology. Fourth Annual converence of the society for the study of nanoscience and emerging technologies
2011
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KonferanseforedragNydal, Rune; Efstathiou, Sophia; Lægreid, Astrid. (2011) Well-constructed systems biology. Integrating Socio-humanist Research. S-Net, Third annual meeting
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KonferanseposterTripathi, Sushil; Venkatesan, Aravind; Egaña, Mikel; Zavareh, Zahra; Chawla, Konika; Mironov, Vladimir; Thommesen, Liv; Bruland, Torunn; Kuiper, Martin; Lægreid, Astrid. (2011) Automated Assessment of High Throughput Hypotheses on Gene Regulatory Mechanisms Involved in the Gastrin Response. Bio-Ontologies 2011
2010
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KonferanseposterTripathi, Sushil; Thommesen, Liv; Bar, Nadav Skjøndal-; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 22nd International Conference of the Society for Medical Innovation and Technology
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KonferanseposterTripathi, Sushil; Thommesen, Liv; Bar, Nadav Skjøndal-; Almaas, Eivind; Kuiper, Martin; Lægreid, Astrid. (2010) Modelling the gastrin signalling pathways. 11th International Conference on Systems Biology
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KonferanseposterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Fjeldbo, Christina Sæten; Flatberg, Arnar; Selvik, Linn-Karina M.; Beisvag, Vidar; Sandvik, Arne Kristian; Lægreid, Astrid; Thommesen, Liv. (2010) Exploring signal-induced cellular regulatory subnetworks by use of partial least square regression (PLSR) multidimensional analysis of gene expression time series data. 13th Annual MGED meeting , Boston, Massachusetts, USA
2009
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KonferanseforedragSelvik, Linn-Karina M.; Misund, Kristine; Fjeldbo, Christina Sæten; Steigedal, Tonje; Bruland, Torunn; Lægreid, Astrid; Thommesen, Liv. (2009) Salt-inducible kinase 1 (SIK1) is involved in the gastrin-mediated growth response and is repressed by ICER and Zfp36l1. NBS Kontaktmøte 2009
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KonferanseposterAnderssen, Endre; Bruland, Torunn; Misund, Kristine; Sandvik, Arne K.; Thommesen, Liv; Lægreid, Astrid. (2009) Using basic networks motifs and biological background knowledge to analyze transcriptomic time series data. MGED Meeting
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KonferanseposterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Beisvåg, Vidar; Sandvik, Arne K.; Lægreid, Astrid; Thommesen, Liv. (2009) Discovering basic network motifs that underlie gastrin induced gene expression. 10th international conference on system biology
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KonferanseforedragThommesen, Liv; Misund, Kristine; Selvik, Linn Karina Myrland; Lægreid, Astrid; Bruland, Torunn. (2009) NR4A" (Nurr1) - involved in gastrin-mediated carcinogenesis?. Contact meeting NBS
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KonferanseforedragBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje Strømmen; Doseth, Berit; Langaas, Mette; Bergum, Hallgeir; Lægreid, Astrid; Thommesen, Liv. (2009) Basic common architectural motifs underlying gastrin induced gene expression can be identified by dimension reduction methods. Contact Meeting NBS
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KonferanseposterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Beisvag, Vidar; Sandvik, Arne Kristian; Thommesen, Liv; Lægreid, Astrid. (2009) Discovering basic network motifs that underlie gastrin induced gene expression. The 10th International Conference on System Biology ICSB-2009, USA
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KonferanseforedragBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje; Doseth, Berit; Fjeldbo, Christina Sæten; Langaas, Mette; Bergum, Hallgeir; Lægreid, Astrid; Thommesen, Liv. (2009) Basic common architectural motifs underlying gastrin induced gene expression can be identified by dimention reduction methods. NBS 43. Contact Meeting
2008
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KonferanseposterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje; Doseth, Berit; Fjeldbo, Christina Sæten; Langaas, Mette; Bergum, Hallgeir; Lægreid, Astrid; Thommesen, Liv. (2008) Significance analysis of gastrin-mediated transcription using dimension reduction methods for interpreting and modelling DNA microarray time series gene expression. 3rd ESF Functional Genomics Conference; Functional genomics and disease
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KonferanseposterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje; Doseth, Berit; Fjeldbo, Christina Sæten; Lægreid, Astrid; Thommesen, Liv. (2008) Molecular mechanisms in cancer related gastrin responses. Cancer Epigenetics Conference
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KonferanseposterSelvik, Linn-Karina M.; Misund, Kristine; Fjeldbo, Christina Sæten; Steigedal, Tonje Strømmen; Bruland, Torunn; Lægreid, Astrid; Thommesen, Liv. (2008) Salt-inducible kinase 1 (SIK1) is involved in the gastrin-mediated growth response. ESF Functional Genomics and Disease
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KonferanseposterBruland, Torunn; Andersen, Endre; Misund, Kristine; Steigedal, Tonje Strømmen; Fjeldbo, Christina Sæten; Lægreid, Astrid; Thommesen, Liv. (2008) Molecular mecanisms in cancer-related gastrin responses. Cancer Epigenetics
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KonferanseposterBruland, Torunn; Anderssen, Endre; Misund, Kristine; Steigedal, Tonje Strømmen; Doseth, Berit; Fjeldbo, Christina Sæten; Langaas, Mette; Bergum, Hallgeir; Lægreid, Astrid; Thommesen, Liv. (2008) Significance analysis of gastrin-mediated transcription using dimension reduction methods for interpreting and modelling DNA microarray time series gene expression data. ESF Functional Genomics and Disease
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KonferanseposterSelvik, Linn-Karina M.; Misund, Kristine; Fjeldbo, Christina Sæten; Steigedal, Tonje; Bruland, Torunn; Lægreid, Astrid; Thommesen, Liv. (2008) Salt-inducible kinase 1 (SIK1) is involved in the gastrin-mediated growth response. ESF Functional Genomics and Disease Conference
2007
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KonferanseforedragSæten, Christina; Misund, Kristine; Steigedal, Tonje; Otterlei, Marit; Lægreid, Astrid; Thommesen, Liv; Bruland, Torunn. (2007) Complex functional studies in mammalian cells using transfected cell arrays. The Norwegian Bichemical Society 43. Contact Meeting
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KonferanseforedragSteigedal, Tonje; Bruland, Torunn; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2007) Inducible cAMP early repressor (ICER) suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression. The Norwegian Bichemical Society 43. Contact Meeting
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KonferanseposterMisund, Kristine; Bruland, Torunn; Anderssen, Endre; Lægreid, Astrid; Thommesen, Liv. (2007) Global gene expression in HEK 293 cells with controllable ICER I and II gamma overexpression. NBS kontaktmøte 2007
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ForedragGether, Harald; Moe, Geir; Nilssen, Robert; Undeland, Tore Marvin; Nielsen, Kai Olav; Karstad, Per Ivar; Lægreid, Astrid. (2007) Ren energi til ren industri. Invitert møte i for departementene (OED, ND, MD)
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KonferanseposterMisund, Kristine; Hoel, Sunniva; Bruland, Torunn; Anderssen, Endre; Lægreid, Astrid; Thommesen, Liv. (2007) Global gene expression in HEK 293 cells with controllable ICER I and IIg - overexpression. Norsk Biokjemisk Selskaps 43. kontaktmøte
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KonferanseposterSæten, Christina; Misund, Kristine; Steigedal, Tonje Strømmen; Lægreid, Astrid; Thommesen, Liv; Bruland, Torunn. (2007) Complex functional studies in mammalian cells using transfected cell arrays. Norsk Biokjemisk Selskaps 43. kontaktmøte
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KonferanseposterSteigedal, Tonje Strømmen; Bruland, Torunn; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2007) Inducible cAMP early repressor (ICER) suppresses gastrin-mediated activation of cyclin D1 and c-fos gene expression. Norsk Biokjemisk Selskaps 43. kontaktmøte
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KonferanseforedragHua, Chen Yan; Ramampiaro, Heri; Lægreid, Astrid; Sætre, Rune. (2007) ProtIR prototype: abstract relevance for Protein-Protein Interaction in BioCreAtIvE2 Challenge, PPI-IAS subtask. BioCreAtIvE II
2006
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KonferanseposterMisund, Kristine; Hoel, Sunniva; Bruland, Torunn; Anderssen, Endre; Lægreid, Astrid; Thommesen, Liv. (2006) Global gene expression in HEK 293 cells with controllable ICER I or IIgamma overexpression. The Seventh International Conference on Systems Biology; ICSB 2006
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KonferanseposterOestvang, Janne; Brattbakk, Hans-Richard; Huseby, Sjur; Langaas, Mette; Lægreid, Astrid; Johansen, Berit. (2006) Transcription profiling show induction of a wide range of proinflammatory genes in response to lysophosphatidylcholine stimulation in monocytes. XIV International Symposium on Atherosclerosis
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KonferanseposterOestvang, Janne; Brattbakk, Hans-Richard; Huseby, Sjur; Langaas, Mette; Lægreid, Astrid; Johansen, Berit. (2006) Lysophosphatidylcholine stimulates increased level of transcript of proinflammatory genes in macrophages. The 7th International Conference on Systems Biology
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KonferanseposterBruland, Torunn; Anderssen, Endre; Eitrem, Berit Doseth; Bergum, Hallgeir; Beisvåg, Vidar; Lægreid, Astrid. (2006) Optimization of cDNA microarrays procdures using optimization criteria that does not rely on an external standard. Poster presentation ICSB-2006 Japan
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KonferanseposterSteigedal, Tonje S.; Bruland, Torunn; Eitrem, Berit Doseth; Endre, Anderssen; Thommesen, Liv; Lægreid, Astrid. (2006) Systems Biology of Gastrointestinal Tumour BiologyStudies of gastrin mediated regulation of gene expression. The 7th International Conference on Systems Biology
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KonferanseposterGünther, Clara-Cecilie; Langaas, Mette; Lydersen, Stian; Beisvåg, Vidar; Junge, Frode Romstad Krohn; Bergum, Hallgeir; Lægreid, Astrid. (2006) Statistical hypothesis testing of association between two lists of genes. Statistics for gene and protein expression workshop
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KonferanseposterArbo, Ingerid; Brattbakk, Hans-Richard; Lindberg, Fedon; Lægreid, Astrid; Langaas, Mette; Alsberg, Bjørn Kåre; Slørdahl, Stig Arild; Nilsson, Astrid; Langsrud, Øyvind; Kulseng, Bård Eirik. (2006) Definisjon av en ”livsstilsalgoritme” til anvendelse for forebygging, diagnose og terapi ved kronisk sykdom. Regional forsknings- og utviklingskonferanse 2006 " Forskning – undring satt i system"
2005
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KonferanseforedragTveit, Amund; Sætre, Rune; Strømmen, Tonje; Lægreid, Astrid. (2005) ProtChew: Automatic Extraction of Protein Names from Biomedical Literature. International Workshop on Biomedical Data Engineering (BMDE 2005, In conjunction with ICDE 2005)
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KonferanseforedragSætre, Rune; Tveit, Amund; Strømmen, Tonje; Lægreid, Astrid. (2005) Semantic Annotation of Biomedical Literature Using Google. Data Mining and Bioinformatics Workshop (DMBIO 2005, In conjunction with ICCSA 2005)
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KonferanseposterSteigedal, Tonje S.; Bruland, Torunn; Ween, Ola; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2005) Function of splice variants of the transcriptional repressor ICER in gastrin-mediated responses. The Norwegian Biochemical Society 41st Contact Meeting
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KonferanseposterWeen, Ola; Beisvåg, Vidar; Strømmen, Tonje; Lægreid, Astrid. (2005) Specific detection of alternative splice variants using oligonucleotide microarrays. 2nd ESF Functional Genomics Conference: Functional Genomics and Disease, Oslo 6-11 september 2005
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KonferanseposterStrømmen, Tonje; Ween, Ola; Thommesen, Liv; Lægreid, Astrid. (2005) Detection of alternatively spliced variants of ICER, a member of the CREB/CREM/ATF transcription factor family. NBS Winter meeting-january 2005-Tromsø
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KonferanseposterMisund, Kristine; Lægreid, Astrid; Thommesen, Liv. (2005) Constitutive and inducible expression of ICER in HEK 293. NBS kontaktmøte
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KonferanseposterBruland, Torunn; Eitrem, Berit Doseth; Anderssen, Endre; Beisvåg, Vidar; Lægreid, Astrid. (2005) Effects of choice and dose of dT blockers in cDNA microarray experiments. NBS Contact meeting
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KonferanseforedragMisund, Kristine; Lægreid, Astrid; Thommesen, Liv. (2005) Constitutive and inducible expression of ICER in HEK 293. Kontaktmøtet Norsk Biokjemisk Selskap 2005
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KonferanseposterBruland, Torunn; Sæten, Christina; Strømmen, Tonje; Bergum, Hallgeir; Otterlei, Marit; Thommesen, Liv; Lægreid, Astrid. (2005) High-throughput characterisation of gene function using cell microarray. The2nd ESF Functional Genomic Conference, Oslo
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KonferanseforedragAnderssen, Endre; Bruland, Torunn; Ween, Ola; Langaas, Mette; Follestad, Turid; Lægreid, Astrid. (2005) Design and analysisi of microarray time series experiment. NBS Kontaktmøte 2005
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KonferanseforedragKusnierczyk, Waclaw; Aamodt, Agnar; Lægreid, Astrid. (2005) Knowledge-Intensive Case-Based Support for Automated Explanation of Biological Phenomena. International Conference on Case Based Reasoning (ICCBR)
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KonferanseposterGunther, Clara-Cecilie; Langaas, Mette; Lydersen, Stian; Beisvåg, Vidar; Jynge, Frode Romstad Krohn; Bergum, Hallgeir; Lægreid, Astrid. (2005) Statistical Hypothesis Testing of Association Between Two Reporter Lists Within the GO-hierarchy. European Meeting of Statisticians
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KonferanseposterArbo, Ingerid; Lindberg, Fedon; Lægreid, Astrid; Langaas, Mette; Alsberg, Bjørn Kåre; Slørdahl, Stig Arild; Nilsson, Astrid; Johansen, Berit. (2005) Medical Technology in cardiovascular disease: The use, development and integration of microarray technology, statistics and computational biology on definition of a "Life style algorithm" to be employed in chronic disease prevention, diagnosis and therapy. European Science Foundation (ESF) Training Course, Microarray Gene Expression Analysis - Power and Potential of Standardisation
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KonferanseposterArbo, Ingerid; Lindberg, Fedon; Lægreid, Astrid; Langaas, Mette; Alsberg, Bjørn Kåre; Slørdahl, Stig Arild; Nilsson, Astrid; Langsrud, Øyvind; Johansen, Berit. (2005) Definition of a "lifestyle algorithm" to be used in chronic disease prevention, diagnosis and therapy. 2nd ESF Functional Genomics Conference "Functional Genomics and Disease"
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KonferanseforedragWeen, Ola; Beisvåg, Vidar; Strømmen, Tonje; Lægreid, Astrid. (2005) Specific detection of alternative splice variants using oligonucleotide microarrays. 2nd ESF Functional Genomics Conference: Functional Genomics and Disease, Oslo 6-11 september 2005
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KonferanseforedragBruland, Torunn; Bergum, Hallgeir; Ween, Ola; Thommesen, Liv; Lægreid, Astrid. (2005) System biology of the normal and diseased gastrointestinal system: High-througput characterisation of gene function using cell microarray. 2nd ESF Function genomica and disease
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KonferanseforedragNørsett, K; Bruland, Torunn; Ween, Ola; Hofsli, Eva; Thommesen, Liv; Misund, Kristine; Strømmen, Tonje; Komorowski, Jan; Sandvik, Arne K.; Lægreid, Astrid. (2005) Systems biology of the normal and diseased gastrointestinal system. 2nd ESF Function genomics and disease
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KonferanseposterSteigedal, Tonje Strømmen; Bruland, Torunn; Ween, Ola; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid. (2005) Function of splice variants of the transcriptional repressor ICER in gastrin-mediated reponses. NBS kontaktmøte
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KonferanseforedragLægreid, Astrid; Thommesen, Liv; Bruland, Torunn; Ween, Ola; Sandvik, Arne K.; Bergum, Hallgeir; Beisvåg, Vidar; Kusnierczyk, W; Aamodt, Agnar; Komorowski, Jan. (2005) System biology of the normal and diseased gastrointestinal system. 8th International meeting of microarray gene expression data society
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KonferanseforedragNørsett, Kristin; Bruland, Torunn; Ween, Ola; Hofsli, Eva; Thommesen, Liv; Misund, Kristine; Strømmen, Tonje; Kusnierczyk, Waclaw; Aamodt, Agnar; Midelfart, Herman. (2005) Systems biology of the normal and diseased gastrointestinal system. 2nd ESF Functional Genomics Conference
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ForedragSætre, Rune; Tveit, Amund; Ranang, Martin Thorsen; Strømmen, Tonje; Thommesen, Liv; Stunes, Astrid Kamilla; Lægreid, Astrid. (2005) gProt: Annotating Protein Interactions Using Google and Gene Ontology. Knowledge-Based Intelligent Information and Engineering Systems: 9th International Conference, KES 2005
2004
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KonferanseforedragDrabløs, Finn; Hammer, Mikael; Lægreid, Astrid; Hauglid, Jon Olav; Alsberg, Bjørn Kåre. (2004) Bioinformatics. InfoSam2020
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KonferanseposterWeen, Ola; Lægreid, Astrid. (2004) Specific detection of alternative splice variants using oligonucleotide microarrays. Symposium - Alternate Transcript Diversity – Data, Biology, and Therapeutics; Wellcome Trust Genome Campus, Hinxton, UK
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KonferanseforedragWeen, Ola; Lægreid, Astrid. (2004) Specific detection of alternative splice variants using oligonucleotide microarrays. NBS kontakmøte 2004
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KonferanseposterStrømmen, Tonje; Prestvik, Wenche Slettahjell; Wong, Garry; Thommesen, Liv; Lægreid, Astrid. (2004) Detection and functional studies of alternatively spliced variants of ICER, a member of the CREB/CREM/ATF transcription factor family. Kontaktmøtet Norsk Biokjemisk Selskap
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KonferanseposterKusnierczyk, Waclaw; Aamodt, Agnar; Lægreid, Astrid. (2004) Towards Automated Explanation of Gene-Gene Relationships. RECOMB 2004
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KonferanseposterMisund, Kristine; Stunes, Astrid Kamilla; Tømmerdal, Linda; Thommesen, Liv; Bruland, Torunn; Lægreid, Astrid. (2004) Constitutive expression of ICER in the cell-line HEK 293. Kontaktmøtet Norsk Biokjemisk Selskap 2004
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KonferanseforedragBruland, Torunn; Bergum, Hallgeir; Steigedal, Tonje; Otterlei, Marit; Thommesen, Liv; Lægreid, Astrid. (2004) Array based screening og gene function and cell-biological application of transfected-cell microarrays. NBS Kontaktmøte
2003
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KonferanseforedragThommesen, Liv; Bergum, Hallgeir; Langaas, Mette; Beisvåg, Vidar; Sandvik, Arne Kristian; Bruland, Torunn; Ween, Ola; Lægreid, Astrid. (2003) Rat Microarray Analysis Resources. Meetings on rat genomics and Models
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KonferanseforedragThommesen, Liv; Bergum, Hallgeir; Langaas, Mette; Beisvåg, Vidar; Sandvik, Arne K.; Bruland, Torunn; Ween, Ola; Lægreid, Astrid. (2003) Rat Microarray Analysis Resources. Meetings on rat genomics and Models
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KonferanseposterThommesen, Liv; Lægreid, Astrid; Misund, Kristine. (2003) Constitutive expression of ICER in the human cell line AR42J. Kontaktmøtet Norsk Biokjemisk Selskap
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KonferanseforedragWitsø, Eivind; Beisvåg, Vidar; Langaas, M.; Lysvand, Hilde; Persen, Leif; Lægreid, Astrid; Bergh, Kåre. (2003) DNA microarray: A new diagnostic tool in orthopaedic infections?. 22nd Annual Meeting: European Bone and Joint Infection Society
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KonferanseforedragNørsett, Kristin; Kuznierczyk, W.; Lægreid, Astrid; Langaas, M.; Waldum, Helge; Sandvik, Arne Kristian. (2003) Gene expression profiles in gastric mucosa during therapeutic acid inhibition. ESF, Functional Genomics and Disease. 1st Conference
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KonferanseposterHofsli, Eva; Sandvik, Arne Kristian; Langaas, Mette; Lægreid, Astrid. (2003) Identification of gastrin-regulated genes in human carcinoid tumor cells. Functional genomics and diseases
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KonferanseforedragNørsett, Kristin; Kuznierczyk, W.; Lægreid, Astrid; Langaas, M.; Yadetie, Fekadu; Kvam, S.N.; Wørlund, S.; Waldum, Helge; Sandvik, Arne Kristian. (2003) Gene expression profiles in hypergastrinemic rats and patients. Norsk Biokjemisk Selskaps Årsmøte
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KonferanseposterHofsli, Eva; Sandvik, Arne K.; Langaas, Mette; Lægreid, Astrid; Thommesen, Liv. (2003) Identification of gastrin-regulated genes in human carcinoid tumor cells. Functional genomics and diseases
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KonferanseposterThommesen, Liv; Lægreid, Astrid; Misund, Kristine. (2003) Constitutive expression of ICER in the human cell line AR42J. Kontaktmøtet Norsk Biokjemisk Selskap
2002
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ForedragYadetie, Fekadu; Bakke, Ingunn; Lægreid, Astrid; Kusnierczyk, Waclaw; Komorowski, Jan; Waldum, Helge; Sandvik, Arne Kristian. (2002) Analysis of effects of the PPAR alpha agonist ciprofibrate on rat hepatic gene expressions using cDNA microarrays. The 7th IUBMB Conference Receptor-ligand Interactions Molecular, Physiological and Pharmacological Aspects
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KonferanseposterMidelfart, Herman; Kusnierczyk, Waclaw Marcin; Hvidsten, Torgeir Rhoden; Lægreid, Astrid; Komorowski, Jan. (2002) Learning Yeast Gene Function from Expression Programs and Gene Ontology. Norwegian Biochemical Society’s Wintermeeting
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KonferanseposterBeisvåg, Vidar; Jølsum, Lars; Kusnierczyk, Waclaw; Langaas, Mette; Alsberg, Bjørn Kåre; Bergum, Hallgeir; Komorowski, Jan; Sandvik, Arne Kristian; Lægreid, Astrid. (2002) eGOn � a new tool for mapping microarray data onto the Gene Ontology structure. Standards and Ontologies for Functional Genomics
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ForedragNørsett, Kristin; Lægreid, Astrid; Yadetie, Fekadu; Midelfart, H; Komorowski, Jan; Falkmer, Sture Emil; Grønbech, Jon Erik; Waldum, Helge; Sandvik, Arne Kristian. (2002) Molekylær klassifisering av magekreft. Norsk Gastroenterologisk Forenings 29. årsmøte
2001
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KonferanseposterHvidsten, Torgeir Rhoden; Komorowski, Jan; Sandvik, AK; Lægreid, Astrid. (2001) Predicting gene function from gene expressions and ontologies. Pacific Symposium on Biocomputiong, PSB2001
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KonferanseforedragHvidsten, TR; Sandvik, Arne Kristian; Midelfart, Herman; Lægreid, Astrid; Komorowski, Jan. (2001) A method based on rough set supervised learning used to predict the biological function of unknown genes from DNA microarray gene expression data. Third International Meeting on Microarray Data Standards, Annnotations,Ontologies and Databases.
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KonferanseforedragMidelfart, Herman; Lægreid, Astrid; Komorowski, Jan. (2001) Classification of Gene Expression Data in an Ontology. The second international Symposium on Medical Data Analysis (ISMDA-2001)
2000
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KonferanseposterHvidsten, Torgeir Rhoden; Jenssen, Tor-Kristian; Komorowski, Jan; Lægreid, Astrid; Sandvik, AK; Tjeldvoll, Dyre. (2000) Template-based gene expression analysis. The Fourth Annual International Conference on Computational Molecular Biology
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KonferanseposterJenssen, Tor-Kristian; Komorowski, Jan; Lægreid, Astrid; Hovig, Eivind. (2000) Pubgen: Discovering and visualising gene-gene relations. The Fourth Annual International Conference on Computational Molecular Biology
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KonferanseforedragKomorowski, Jan; Hvidsten, Torgeir Rhoden; Jenssen, Tor-Kristian; Tjeldvoll, Dyre; Hovig, Eivind; Sandvik, AK; Lægreid, Astrid. (2000) Towards Knowledge Discovery from cDNA Microarray Gene Expression Data. Principles of data mining and knowledge discovery : 4th European conference
1999
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ForedragJenssen, TK; Lægreid, Astrid; Komorowski, Jan. (1999) Knowledge-Based Data Mining in Genomics. Data Mining for Bioinformatics - Towards In Silico Biology
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ForedragNørsett, Kristin; Thommesen, Liv; Hofsli, E; Sandvik, AK; Lægreid, Astrid. (1999) Molecular characterization of the neuroendicrine cell line AR42J. Biokjemisk kontaktmøte
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KonferanseposterHvidsten, Torgeir Rhoden; Jenssen, Tor-Kristian; Lægreid, Astrid; Øhrn, Aleksander; Tjeldvoll, Dyre; Komorowski, Jan. (1999) Boolean Reasoning in the Analysis of Gene Expression Data. Data Mining for Bioinformatics: Towards in Silico Biology
1998
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ForedragJohansen, Berit; Lægreid, Astrid; Sjursen, Wenche; Thommesen, Liv; Anthonsen, Marit Walbye. (1998) A role of both secretory and cytosolic phospholipase A2 in TNF mediated nuclear translocation of NFkB and ICAM expression in keratinocytes?. NBS Kontaktmøte 98
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KonferanseposterNørsett, Kristin; Thommesen, Liv; Hofsli, E; Sandvik, AK; Lægreid, Astrid. (1998) Molecular characterization of the neuroendocrine cell line AR42J. Norsk Biokjemisk Selskaps Årsmøte
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KonferanseposterThommesen, Liv; Nørsett, Kristin; Sandvik, AK; Lægreid, Astrid. (1998) Induction of ICER gene expression in neuroendocrine derived cell lines. International Congress on Signal Transduction
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KonferanseposterThommesen, Liv; Nørsett, Kristin; Sandvik, AK; Lægreid, Astrid. (1998) ICER expression in gastrin stimulated endocrine cells. Norsk Biokjemisk Selskaps Årsmøte
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KonferanseforedragJohansen, Berit; Lægreid, Astrid; Sjursen, Wenche; Thommesen, Liv; Anthonsen, Marit Walbye. (1998) A role for both secretory and cytosolic phospholipase A2 in TNF mediated nuclear translocation of NFkB and ICAM expression in keratinocytes?. NBS Kontaktmøte 98
1997
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KonferanseforedragSandvik, AK; Gabestad, K.; Thommesen, Liv; Lægreid, Astrid. (1997) Mechanisms for transcriptional regulation of the immediate early response gene ICER vary between different neuroendocrine derived cell lines. XXXIII International Congress of Physiological Sciences
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KonferanseforedragJohansen, Berit; Lægreid, Astrid; Sjursen, Wenche; Thommesen, Liv. (1997) A role for both secretory and cytosolic phospholipase A2 in TNF mediated nuclear translocation of NFkB and ICAM expression in keratinocytes. FEBS Special Meetintg on Signal Transduction
1996
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KonferanseforedragThommesen, Liv; Sjursen, Wenche; Gåsvik, Katrine; Johansen, Berit; Lægreid, Astrid. (1996) The role of phospholipases A2 in the activation of NFkB in human keratinocytes. 32. Biokjemiske kontaktmøte
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KonferanseforedragLægreid, Astrid; Nonstad, Unni; Sundan, Anders; Espevik, Terje. (1996) Lipopolysaccharide signalling mechanism in human adenocarcinoma SW480 cells. 32. Biokjemiske kontaktmøte
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