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  1. Ansatte

Språkvelger

English

Vladimir Mironov

Last ned pressefoto
Last ned pressefoto
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Vladimir Mironov

Tilknyttet/affiliated

vladimir.mironov@ntnu.no
73550350 73550349 Realfagbygget, DU2-141, Gløshaugen, Høgskoleringen 5
ResearchGate Expertise and activities
Publikasjoner Formidling

Publikasjoner

  • Kronologisk
  • Etter kategori
  • Se alle publikasjoner i Cristin

2024

  • Mulero-Hernández, Juan; Mironov, Vladimir; Miñarro-Giménez, José Antonio; Kuiper, Martin; Fernández-Breis, Jesualdo Tomás. (2024) Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation. Nucleic Acids Research (NAR)
    Vitenskapelig artikkel

2020

  • Puig, Rafael Riudavets; Holmås, Stian; Mironov, Vladimir; Kuiper, Martin. (2020) Network Building with the Cytoscape BioGateway App Explained in Five Use Cases . Current Protocols in Bioinformatics
    Vitenskapelig artikkel

2019

  • Holmås, Stian; Riudavets Puig, Rafael; Acencio, Marcio Luis; Mironov, Vladimir; Kuiper, Martin. (2019) The Cytoscape BioGateway App: explorative network building from an RDF store. Bioinformatics
    Vitenskapelig artikkel

2017

  • Nordgård, Anna Synnøve Røstad; Bergland, Wenche Hennie; Vadstein, Olav; Mironov, Vladimir; Bakke, Rune; Østgaard, Kjetill. (2017) Anaerobic digestion of pig manure supernatant at high ammonia concentrations characterized by high abundances of Methanosaeta and non-euryarchaeotal archaea. Scientific Reports
    Vitenskapelig artikkel

2014

  • Blondé, Ward; Antezana, Erick; Mironov, Vladimir; Schulz, Stefan; Kuiper, Martin; De baets, Bernard. (2014) Using the relation ontology Metarel for modelling Linked Data as multi-digraphs. Semantic Web Journal
    Vitenskapelig artikkel
  • Venkatesan, Aravind; Tripathi, Sushil; Sanz de Galdeano, Alejandro; Blondé, Ward; Lægreid, Astrid; Mironov, Vladimir. (2014) Finding gene regulatory network candidates using the gene expression knowledge base. BMC Bioinformatics
    Vitenskapelig artikkel
  • Mironov, Vladimir; Kuiper, Martin; Ekseth, Ole Kristian. (2014) OrthAgogue: An agile tool for the rapid prediction of orthology relations. Bioinformatics
    Vitenskapelig artikkel

2013

  • Antezana, Erick; Mironov, Vladimir; Kuiper, Martin. (2013) The emergence of Semantic Systems Biology. New Biotechnology
    Vitenskapelig artikkel
  • Kuiper, Martin; Antezana, Erick; Mironov, Vladimir. (2013) Cell Cycle Ontology (CCO).
    Nettsider (opplysningsmateriale)

2012

  • Kuiper, Martin; Venkatesan, Aravind; Antezana, Erick; Vercruysse, Steven; Mironov, Vladimir; Blondé, Ward. (2012) Putting Semantics in Systems Biology. META
    Fagartikkel
  • Mironov, Vladimir; Seethappan, Nirmala; Blondé, Ward; Antezana, Erick; Splendiani, Andrea; Kuiper, Martin. (2012) Gauging triple stores with actual biological data. BMC Bioinformatics
    Vitenskapelig artikkel

2011

  • Blondé, Ward; Mironov, Vladimir; Venkatesan, Aravind; Antezana, Erick; De baets, Bernard; Kuiper, Martin. (2011) Reasoning with bio-ontologies: using relational closure rules to enable practical querying. Bioinformatics
    Vitenskapelig artikkel
  • Mironov, Vladimir; Antezana, Erick; Egaña, Mikel; Blondé, Ward; De baets, Bernard; Kuiper, Martin. (2011) Flexibility and utility of the cell cycle ontology. Applied Ontology
    Vitenskapelig artikkel

2010

  • Antezana, Erick; Venkatesan, Aravind; Mungall, Chris; Mironov, Vladimir; Kuiper, Martin. (2010) ONTO-ToolKit: enabling bio-ontology engineering via Galaxy. BMC Bioinformatics
    Vitenskapelig artikkel

2009

  • Antezana, E; Kuiper, Martin; Mironov, Vladimir. (2009) Biological knowledge management: the emerging role of the Semantic Web technologies. Briefings in Bioinformatics
    Vitenskapelig oversiktsartikkel/review
  • Antezana, Erick; Blondé, Ward; Egaña, Mikel; Rutherford, Alistair; Stevens, Robert; De baets, Bernard. (2009) BioGateway: A Semantic Systems Biology Tool for the Life Sciences. BMC Bioinformatics
    Vitenskapelig artikkel

Tidsskriftspublikasjoner

  • Mulero-Hernández, Juan; Mironov, Vladimir; Miñarro-Giménez, José Antonio; Kuiper, Martin; Fernández-Breis, Jesualdo Tomás. (2024) Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation. Nucleic Acids Research (NAR)
    Vitenskapelig artikkel
  • Puig, Rafael Riudavets; Holmås, Stian; Mironov, Vladimir; Kuiper, Martin. (2020) Network Building with the Cytoscape BioGateway App Explained in Five Use Cases . Current Protocols in Bioinformatics
    Vitenskapelig artikkel
  • Holmås, Stian; Riudavets Puig, Rafael; Acencio, Marcio Luis; Mironov, Vladimir; Kuiper, Martin. (2019) The Cytoscape BioGateway App: explorative network building from an RDF store. Bioinformatics
    Vitenskapelig artikkel
  • Nordgård, Anna Synnøve Røstad; Bergland, Wenche Hennie; Vadstein, Olav; Mironov, Vladimir; Bakke, Rune; Østgaard, Kjetill. (2017) Anaerobic digestion of pig manure supernatant at high ammonia concentrations characterized by high abundances of Methanosaeta and non-euryarchaeotal archaea. Scientific Reports
    Vitenskapelig artikkel
  • Blondé, Ward; Antezana, Erick; Mironov, Vladimir; Schulz, Stefan; Kuiper, Martin; De baets, Bernard. (2014) Using the relation ontology Metarel for modelling Linked Data as multi-digraphs. Semantic Web Journal
    Vitenskapelig artikkel
  • Venkatesan, Aravind; Tripathi, Sushil; Sanz de Galdeano, Alejandro; Blondé, Ward; Lægreid, Astrid; Mironov, Vladimir. (2014) Finding gene regulatory network candidates using the gene expression knowledge base. BMC Bioinformatics
    Vitenskapelig artikkel
  • Mironov, Vladimir; Kuiper, Martin; Ekseth, Ole Kristian. (2014) OrthAgogue: An agile tool for the rapid prediction of orthology relations. Bioinformatics
    Vitenskapelig artikkel
  • Antezana, Erick; Mironov, Vladimir; Kuiper, Martin. (2013) The emergence of Semantic Systems Biology. New Biotechnology
    Vitenskapelig artikkel
  • Kuiper, Martin; Venkatesan, Aravind; Antezana, Erick; Vercruysse, Steven; Mironov, Vladimir; Blondé, Ward. (2012) Putting Semantics in Systems Biology. META
    Fagartikkel
  • Mironov, Vladimir; Seethappan, Nirmala; Blondé, Ward; Antezana, Erick; Splendiani, Andrea; Kuiper, Martin. (2012) Gauging triple stores with actual biological data. BMC Bioinformatics
    Vitenskapelig artikkel
  • Blondé, Ward; Mironov, Vladimir; Venkatesan, Aravind; Antezana, Erick; De baets, Bernard; Kuiper, Martin. (2011) Reasoning with bio-ontologies: using relational closure rules to enable practical querying. Bioinformatics
    Vitenskapelig artikkel
  • Mironov, Vladimir; Antezana, Erick; Egaña, Mikel; Blondé, Ward; De baets, Bernard; Kuiper, Martin. (2011) Flexibility and utility of the cell cycle ontology. Applied Ontology
    Vitenskapelig artikkel
  • Antezana, Erick; Venkatesan, Aravind; Mungall, Chris; Mironov, Vladimir; Kuiper, Martin. (2010) ONTO-ToolKit: enabling bio-ontology engineering via Galaxy. BMC Bioinformatics
    Vitenskapelig artikkel
  • Antezana, E; Kuiper, Martin; Mironov, Vladimir. (2009) Biological knowledge management: the emerging role of the Semantic Web technologies. Briefings in Bioinformatics
    Vitenskapelig oversiktsartikkel/review
  • Antezana, Erick; Blondé, Ward; Egaña, Mikel; Rutherford, Alistair; Stevens, Robert; De baets, Bernard. (2009) BioGateway: A Semantic Systems Biology Tool for the Life Sciences. BMC Bioinformatics
    Vitenskapelig artikkel

Informasjonsmateriell

  • Kuiper, Martin; Antezana, Erick; Mironov, Vladimir. (2013) Cell Cycle Ontology (CCO).
    Nettsider (opplysningsmateriale)

Formidling

2019

  • Poster
    Holmås, Stian; Mironov, Vladimir; Kuiper, Martin. (2019) Network building in Cytoscape using the BioGateway App. Albert Burger, Ronald Cornet SWAT4(HC)LS 2019: Semantic Web Applications and Tools for Healthcare and Life Sciences , Edinburgh 2019-12-09 - 2019-12-12

2016

  • Poster
    Bakke, Ingrid; Nordgård, Anna Synnøve Røstad; Bergland, Wenche Hennie; Vadstein, Olav; Mironov, Vladimir; Østgaard, Kjetill. (2016) Microbial community dynamics in anaerobic digestion at high ammonia concentrations. International Society of Microbial Ecology International Symposium on Microbial Ecology ISME 16 , Montreal 2016-08-21 - 2016-08-26

2014

  • Poster
    Kuiper, Martin; Mironov, Vladimir; Venkatesan, Aravind; Tripathi, Sushil; Blondé, Ward; Sanz de Galdeano, Alejandro. (2014) The gene expression knowledge base. Stig Omholt / VPH consortium Virtual Physiological Human Conference 2014 , Trondheim 2014-09-09 - 2014-09-12

2012

  • Vitenskapelig foredrag
    Venkatesan, Aravind; Mironov, Vladimir; Kuiper, Martin. (2012) Towards an integrated knowledge system for capturing gene expression events. Stefan Schulz, Catalina Martínez, Markus Kreuzthaler 3rd International Conference on Biomedical Ontology (ICBO 2012) , Graz 2012-07-21 - 2012-07-25
  • Poster
    Hollunder, Jens; Mironov, Vladimir; Antezana, Erick; Hoehndorf, Robert; Kuiper, Martin. (2012) Profiling of Semantically Annotated Proteins. SWAT4LS Semantic Web Applications and Tools for Life Sciences 2012 , Paris 2012-11-28 - 2012-11-30
  • Poster
    Venkatesan, Aravind; Antezana, Erick; Blondé, Ward; Vercruysse, Steven; Mironov, Vladimir; Kuiper, Martin. (2012) Putting Semantics in Systems Biology. Norwegian Bioinformatics Forum NTNU Bioinformatics Network Seminar 2012 Norwegian Bioinformatics Forum 2012 , Trondheim 2012-10-18 - 2012-10-19

2011

  • Poster
    Tripathi, Sushil; Venkatesan, Aravind; Egaña, Mikel; Zavareh, Zahra; Chawla, Konika; Mironov, Vladimir. (2011) Automated Assessment of High Throughput Hypotheses on Gene Regulatory Mechanisms Involved in the Gastrin Response. ISMB 2011 Bio-Ontologies 2011 , Vienna 2011-07-15 - 2011-07-16
  • Vitenskapelig foredrag
    Venkatesan, Aravind; Blondé, Ward; Antezana, Erick; Skillingstad, Mats Gløer Løkås; Marshall, Scott M; De baets, Bernard. (2011) The RDF Foundry: Call for an initiative to build enhanced RDF resources for biological data integration. WIMS: International Conferences on Web Intelligence, Mining and Semantics. , Sogndal 2011-05-25 - 2011-05-27
  • Vitenskapelig foredrag
    Antezana, Erick; Blondé, Ward; Venkatesan, Aravind; De baets, Bernard; Mironov, Vladimir; Kuiper, Martin. (2011) Semantic SB: enablng integrative biology via SW technologies. WIMS: International Conferences on Web Intelligence, Mining and Semantics. , Sogndal 2011-05-25 - 2011-05-27
  • Vitenskapelig foredrag
    Mironov, Vladimir; Venkatesan, Aravind; Kuiper, Martin. (2011) RDF Foundry - a call for a community effort to harmonize triple store practices. BioHackathon 2011 , Kyoto University 2011-08-20 - 2011-08-26

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